Nicotiana tomentosiformis: 104101597
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Entry
104101597 CDS
T05025
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104101597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104101597
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104101597
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104101597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104101597
NCBI-ProteinID:
XP_009607374
LinkDB
All DBs
Position
6:complement(84849097..84861484)
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AA seq
658 aa
AA seq
DB search
MSGLLNSSLNGSASNLPDNTGRSFPSSFSPQSGAASPLYHHSGNIQGLHNMHGSFNVPNM
SGTLGSRNTTINNVPSSGVQQSGNSLSSGRFASNNIPVALSQISQGSSHGHSSMTSRGGM
SVVGNAGYSSNTNGVGGSIPGILPTSAAIGNRSSVPGLGMSPILGNAGPRMSNSVGNIVG
GNIGRSISSGAGLSVPGLASRLNLTANSGSGNLNVQGSNRLMSGVLQQASPQVMSMLGNS
YPPAGGPLSQNHIQAVGNLNSMGMLNDLNSSDGSPFDINDFPQLSSRPSSAGGPQGQLGS
LRKQIVQQNQEFSIQNEDFPALPGFKGGNADYGMDLHQKEQLHDNTLSMMQQQHFSMGRS
GGFNLGGTYSSLRSQQQQQHAPSVSNSGLSFSSVNNQDPLHLHGSDVFSSSHSSYHQQSG
GPPGIGLRPLNSPSAVSGIGSYDQLIQQYQQHQSQSQFRLQQMSALGQSYRDQGMKSMQA
QAAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENLHKAFGSPWSDEPAKG
DPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRGWFYHR
EHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIRKDNFVLHYEMLEKRPVLPQH
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttactcaattcatctctaaacgggtcagcgtcaaatcttcctgacaacacc
ggacgctcatttccttcatctttctctcctcaatctggtgcagcttcccctctttatcat
cactctggaaatattcagggccttcataacatgcatgggagttttaatgttcctaacatg
tcgggtacacttggttcaagaaacacaacaataaataatgtcccttcaagtggtgtccag
caatctggaaatagcctctctagtggtcgttttgcatcaaataatattccagtagccctt
tcacagatatcccagggaagttctcatggtcattccagcatgacaagtagaggtggtatg
agtgttgttggtaacgcgggatatagtagtaacactaatggcgttgggggttctattcct
ggaattctgccaacctctgcagcaattggtaatcgaagctctgttccaggccttggcatg
tccccaattttgggaaatgctggtccaaggatgtcaaactcagttggaaatatagttgga
ggcaacattgggagaagcatcagctctggtgcaggattgtctgtgcctggtcttgcttct
agactaaatttgactgcgaacagtggttctggaaatttaaatgttcaaggatctaatagg
ctaatgagtggtgtcctccagcaagcctctccgcaggtaatgtctatgttaggtaattca
tatcctcctgctggtggtccactatctcagaaccatatccaagcagtcggcaaccttaat
tctatgggaatgctgaatgatctgaattcaagtgatggatctccatttgatataaacgat
ttccctcagctaagcagtcgacctagttctgctggagggcctcaaggacaattgggttca
ctgcgaaaacaaattgttcaacaaaatcaggaattcagcattcaaaatgaagattttccg
gccttgccaggatttaaaggtggcaatgctgattatggtatggatctacaccagaaagaa
caactccatgataatactctttctatgatgcagcagcagcacttctctatgggcagatct
ggtggctttaacttgggagggacatactcatcacttcgctcacagcagcaacagcaacat
gccccatcagtgagtaatagtggtctctctttttcaagtgttaacaaccaggatccacta
catttacatggttcagatgtcttctcatcatcgcactccagttatcaccaacagtctggt
ggacctcctggtatcgggttacggcctcttaattctccaagtgctgtttctggtattggc
tcttacgatcagcttatccagcagtatcaacaacatcagagtcaatcccaatttcgactg
cagcaaatgtctgctttaggtcagtcgtacagggatcagggcatgaaatccatgcaggcc
caagctgcccctgacccttttggtatgcttggtttgctaagtgtaataaggatgagcgat
ccggatctgacttctcttgcacttggaattgatctaacaactcttggattgaatttgaac
tctaccgaaaatttacacaaggcatttggttccccatggtctgatgagcctgccaagggt
gatccagaatttactgtaccgcaatgttattatgccaagcaaccacctcctctaaatcaa
gcatacttctccaagtttcagttagacactttattttacattttctacagcatgccaaag
gatgaagcccaattatatgctgctaatgaattgtataatcggggctggttttaccacaga
gaacatcgattatggtttatgagggtcgccaacatggagcctcttgtcaagaccaacgcc
tatgagagaggatcttatatatgttttgatccaaacacatgggaaacaatccgcaaggat
aattttgtgctccactatgagatgttggaaaaaagacctgttctacctcagcactaa
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