Nicotiana tomentosiformis: 104102344
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Entry
104102344 CDS
T05025
Name
(RefSeq) protein CHROMATIN REMODELING 8
KO
K10841
DNA excision repair protein ERCC-6
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
104102344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nto03036
]
104102344
03400 DNA repair and recombination proteins [BR:
nto03400
]
104102344
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104102344
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
104102344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
Motif
Other DBs
NCBI-GeneID:
104102344
NCBI-ProteinID:
XP_009608324
LinkDB
All DBs
Position
1:complement(110403534..110411978)
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AA seq
1212 aa
AA seq
DB search
MEEEEEDKILLSSLGVTSANPEDIEHDILEKATRHPGESNEATGSAEEEIVERKKGNEEG
QDKKLDLYNKLRAVEVEIDAIKSGFGHLERFRRHEEEVPDTDGRSEAKQTESEQSVIQAP
LDDSNLQHALADDRLRSLLKTKAQLKKELLDFTDDTSRDALIRDLVKDQPEFKRKVKEVQ
KSSNKKSKRRKTTLLDDDDDFDAVLTAASSGFVETERDALVRKGMLTPFHQLKGFERRVQ
DSESFGRQSTAADINSNDNDLASTSIDKAVQSISQAAQARPTTKLLDSASLPKLEAPTHP
FQRLRKPLKIPQSLETTPEKNGDGTRKKKRPLPSKKWRKLASREQSQNEGSDVNTSSHED
NQGDIEDVEPPFVALEGGFRIPETIFNSLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGK
TVQVLSFLGSLHFSNMYKPSIIICPVTLLRQWKREAKKWYPSFHVEILHDSAHDLSSKKK
QADSESDYESEDLLDSETEGHTSSRTSKKWDPVIARVVRSNSGLLITTYEQLRILGEKLL
DIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGK
LGVLPVFEAEFAVPISVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTK
KTEHVLFCSLTPEQRSVYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHSC
RDPDYGNPERSGKMKVVAEVLKVWKEQGHRVLLFSQTQQMLDIFERFLVTCEYNYRRMDG
VTPVKQRMALIDEFNNTDDIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARER
AWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFTL
NDDENGGSTETSSIFSQVSEDVNIVGAPDNQDKRSFKATSEKDGDSNIGGGNNSKTKGNV
GDGNSNGELDGEASILQSLFDAHGIHSAMNHDAIMNAHDEEKLKLEEQASQVAQRAAEAL
RQSRMLRSRENVAVPTWTGKSGAAGGPSSVKRKFGSTVNPQLTSKLSEESLNDSASRANA
FAAGASAGKALSSAELLARIRGNQEKAVSDGLVHQFGMSASTSNGRAGSLNSGHRSASCS
YVVQPEVLVLQICTFIQQRGGKTNSASIVDHFRDRVPSKDLPLFKDLLKEIATLDKQPSG
SFWVLKPEYQDQ
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaggaggaagataagattttactcagcagtttgggtgtgacctctgcaaat
cctgaagatattgaacatgacatcttggaaaaggcaacaaggcaccctggggagagcaat
gaagctaccgggagtgctgaagaagagatagtggaaagaaagaaaggcaatgaagaagga
caggataagaaattagatttgtataataaactgagagcagtagaagtagaaatagatgcg
attaagagtggttttggacacttggagcgcttcagaagacatgaggaggaagtcccagat
actgatggtagaagcgaggcaaagcagacagagagtgagcaaagcgttattcaggcacct
ctggatgattcaaaccttcaacatgctttagctgatgatcgtctaagaagtcttctcaaa
acgaaggctcaacttaagaaagaacttttggattttactgatgatacttcgcgtgatgca
ttgatacgagatcttgttaaggatcaacctgaattcaaaagaaaggtgaaggaagttcag
aaatcaagcaacaagaagagcaaacggcggaagacgacattgctggatgatgatgatgat
tttgatgcagtgttaactgcagcatcttctggatttgttgaaacagaaagagatgcactg
gtaaggaaaggaatgttaacccccttccaccagctcaaaggctttgaacgtcgggttcaa
gattcggagtcttttggcagacaaagtactgcagctgatataaacagtaatgacaatgac
ctggcttccaccagtatagacaaggctgtccagtcaatttcacaggcagctcaagctcgt
ccaaccaccaagttgcttgattctgcttcattaccaaaactcgaggcaccaacccaccct
ttccaaagactaaggaaaccccttaaaatccctcaatcgttagagactacaccagagaag
aatggagatggtaccaggaagaagaaaagaccgttacctagcaagaagtggagaaagttg
gcatctcgtgagcaaagccagaatgaaggatcagatgtcaatacctccagtcatgaggac
aaccaaggggatattgaagatgtagaacctccttttgtggcacttgaaggtggattcaga
atcccggaaactatctttaacagtctttttgactatcagaaggttggtgtacagtggctg
tgggaacttcactgtcaaagagctggtgggataattggagatgagatgggacttggtaaa
accgtacaggttttatcttttcttggatcactgcattttagcaatatgtataagccaagc
attatcatttgtcctgtcactcttttgaggcaatggaagagggaagctaaaaaatggtat
cccagcttccacgtggagatattacatgattcagctcatgatctatcaagtaaaaagaag
caagcagattctgaaagtgactatgaaagcgaagatctgcttgacagtgagactgaagga
cacacatcttcgaggacttccaaaaaatgggatcccgtgatagctcgtgttgtaagatca
aattctggactattgatcaccacttatgagcaactccgtatattgggagagaaattactt
gacatcgaatggggttatgcagtgttagatgaaggacatcgaattcggaatccaaatgct
gaagttactcttgtatgcaagcagctccagactgttcaccgtatcataatgacaggggcc
ccaattcaaaacaagctgagtgaactgtggtcattgtttgattttgtcttccctggaaag
ttgggagttctacctgtgtttgaggctgaatttgctgttcccatttctgttggggggtat
gctaatgcaacacccttgcaagtttccacagcttacagatgcgctgtggtgttgcgtgac
ttaatcatgccttacctcctccggcggatgaaagctgatgtcaatgctcatctcactaag
aaaactgagcatgtcctcttctgcagcctcacaccagagcagcgatctgtttaccgagct
tttcttgctagctctgaggttgaacagatctttgatgggaacaggaattctctgtatgga
attgatgtaatgcggaaaatttgcaaccatcccgatcttcttgagagagaacactcctgt
agagatccagactatggaaatcctgaacgcagtgggaaaatgaaagttgttgcagaagtg
cttaaggtatggaaagaacaggggcaccgtgttctccttttttctcaaactcaacagatg
cttgatattttcgagagatttctggttacttgtgagtacaattataggcggatggatggt
gtcactcctgtaaagcagaggatggctttgatagatgaatttaacaatacagatgatatt
ttcatcttcatcttgacaacaaaagttggtggtctggggacaaacttgacaggagctaac
agagtaatcatttttgatcctgactggaacccatcaactgacatgcaggcccgggagcgt
gcttggcgaattggtcagaaaaaggatgttacagtgtatcgattgattacccgaggaacc
atagaggagaaggtgtatcatcgacagatttacaagcactttcttaccaacaaaatattg
aagaacccacagcaaagaagatttttcaaagcaagagatatgaaggatctctttacatta
aatgatgatgaaaatgggggatctacagaaacatctagcattttcagccaggtatctgaa
gatgtgaacattgttggggccccagataatcaagataaacgatcttttaaagcaacgtca
gaaaaggatggtgattccaatattggcgggggaaacaactcaaaaaccaagggaaacgtg
ggagatggtaacagcaatggggagttagatggagaagcaagcatcctgcagagtcttttt
gacgctcatgggatccatagtgcgatgaatcatgatgctatcatgaatgctcatgatgaa
gagaagttgaagctagaggagcaggcatcccaagtagctcagagagctgcagaagcactg
cgacaatcaagaatgcttcgaagtcgagaaaatgtagcagtgccaacttggactggcaaa
tcaggagctgctggggggccatcatctgttaaaaggaaatttggttctactgttaatcct
caattaaccagtaagttatctgaagaatcattgaatgactctgctagtagggcaaatgct
tttgctgctggggcatctgctggaaaagcattatcttcagcggagttattggctaggatt
agggggaaccaagagaaagccgttagtgatggacttgtgcatcagtttggtatgtcggct
tcaacctcaaatggcagagcaggttctctaaatagtgggcatcggagtgcatcttgtagc
tacgtagttcagccagaggtgttggttctccagatctgcacgtttatacaacagagaggt
gggaaaaccaattcagccagcattgtagatcatttcagggaccgggtaccatcaaaggat
ctgccactgttcaaggatcttttgaaggaaatagcgactctggataaacaacctagtgga
tctttttgggtgttaaagcctgaataccaggatcagtag
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