Nicotiana tomentosiformis: 104102696
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Entry
104102696 CDS
T05025
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104102696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nto04131
]
104102696
Membrane trafficking [BR:
nto04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
104102696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_WDHD1_1st
WD40
Beta-prop_HPS5
zf_RING_Vps8
WD40_CDC20-Fz
WD40_Prp19
WDR55
zf-RING_2
Beta-prop_EML_2
zf_RING_Vps8_fungal
Beta-prop_WDR11_2nd
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
EIF3I
Beta-prop_IP5PC_F
PEP5_VPS11_N
zf-HC5HC2H
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
104102696
NCBI-ProteinID:
XP_009608774
LinkDB
All DBs
Position
6:89468323..89480828
Genome browser
AA seq
963 aa
AA seq
DB search
MNSIVMSQMPSENGIDGDDEREEEDSEEDSGEEEEEEEHEPRLKYQRMGGSVPSLLSTDA
ATCIAVAERMIALGTHAGAVHILDFLGNQIKEFAAHTAAVNDLCFDTEGEYVGSCSDDGS
VVINSLFTDERMKFDYHRPMKAIALDPDYARKSSRRFVTGGLAGHLYLNVKKWLGYRDQV
LHSGEGPIHAVKWRSSLVAWANDAGVKVYDAANDQRITFIERPRGIPRPELLLPHIVWQD
DTLLVIGWGTSVKIALIRTTQSKGVNGTYKHIPMSSLNQVDIVASFQTSYFISGIAPFGD
SLVILAYIPGEEDGEKDFSSTIPSRQGNAQRPEVRVVTWNNDELATDALPVHGFEHYKAK
DYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHINWLLQHGWHEKAL
EAVEANQGQSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQ
LPVLVPYIPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPPRIYSTMPVISAIEP
QINTSSMTDPLKEALAELFVIDGQHDKAFALYADLMKPDLFDFIEKHNLHDAVREKVVQL
MMIDCKRAVLLLIQQRDLISPSEVVSQLIAAKDKCDYRYFLHLYLHSLFEANLHAGKDYH
DMQVELYADYDPKMMLTFLRSSQHYTLEKAYEICVKKDLLKEQVFILGRMGNAKQALSVI
INSLGDIEEAIEFVSMQQDDELWEELIKQSFHKPEMVGVLLEHTVGNLDPLYIVNMLPNG
LEIPRLRDRLVKIVTDYRTETSLRHGCNDILKADCVNLLVKYYKEAKRAVCLSDEVDEAS
SHRGEKRASHLGERVMSMKSMEVKSKTRGGGRCCICFDPFSIQNVSIIAFFCCHTYHTTC
LMESTISIGGKKEAGAAAHGTVSYDEYDNGVRDDDEEEEDKDEDEDASGAPRMRCILCTT
AAG
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtatcgtgatgtctcaaatgccatcggagaatggaatcgacggcgacgatgag
agagaagaagaagattctgaagaagattctggagaagaagaagaagaggaggagcatgag
ccgaggttgaagtatcagagaatgggcggtagtgtgccgtcgctactatcaactgatgct
gccacgtgtattgccgtcgccgaacgaatgatcgcccttggtacacacgctggagctgtt
cacattctagatttcctcggtaatcagattaaggagtttgctgctcacactgctgctgtc
aatgacctttgctttgacacagaaggggaatacgttggtagctgctctgatgatggctct
gttgtaataaatagtctttttactgatgagagaatgaaatttgattatcaccgaccaatg
aaggccattgctctagaccctgattatgcaagaaaatcttccagaagatttgttactggt
ggtttggcaggtcatttgtatttaaatgttaagaagtggctaggctatcgtgaccaggtt
ttgcactctggtgaaggtccaattcatgcggtgaagtggagaagtagcctcgtcgcctgg
gcaaatgatgcaggagttaaagtctatgatgctgccaatgatcagcgtataacatttatt
gaaagacctcgtgggattcctcgacctgaactgctgctccctcatatagtttggcaggac
gacactcttttggtcattggttggggaacttctgtgaaaatcgcattgataagaacaact
caaagcaaaggcgtgaatgggacgtataagcatatacctatgtctagtctaaatcaggtg
gatatagtggcatcttttcaaaccagctatttcatttcaggaattgctccttttggtgat
tctttggttattctagcttatattccgggtgaagaagatggagagaaggacttcagcagc
actattccctccagacagggaaatgctcaaagacctgaagtgcgagttgtgacatggaat
aatgatgagctcgcgacggacgctcttcctgttcacggttttgagcattacaaggccaaa
gactattcgctcgctcatgctccattctctggtagcagctatgcaggaggtcagtgggct
gctggtgatgaacccttatactatattgtatccccaaaggatgtcgttattgcaaaacca
agggatgcagaggatcacattaattggctactccagcatggatggcatgagaaagcttta
gaagctgttgaagccaatcagggtcagagtgaactacttgatgaggttggttctagatac
cttgatcatttgattgtcgaaagaaaatatgctgaagcggcatctttgtgtccaaagttg
ttgcgaggatcagcttccgcatgggaaagatgggttttccactttgcacatctccggcag
cttccagttttggttccatatatcccaactgaaaacccaagattacgtgatacggcttat
gaggtagctcttgttgctttggcaacaaatccatctttccacaaggatctcttatcaact
gtcaaatcttggccacctcgcatttattctacaatgcctgttatctccgctattgaacct
cagattaatacctcatctatgactgatccactcaaagaggcgctagcagagttatttgta
attgatggacaacacgataaagcttttgctctttatgctgatcttatgaaaccggatcta
tttgacttcatcgaaaagcataatttgcatgatgctgttcgtgaaaaggtagtccaactt
atgatgatcgactgcaagcgtgcggtactgctgttaatccagcaacgtgacttaatatca
ccatctgaagtggtatcacagcttattgctgcaaaggataagtgtgattaccgatacttt
ttgcatctctatcttcattcactatttgaagcaaatctccatgctggaaaggattaccat
gacatgcaggttgagctgtatgctgactatgatcctaagatgatgcttacctttctaaga
agcagccagcattatacattggagaaggcttatgaaatctgtgtgaagaaagatttactg
aaagagcaggttttcatccttggaagaatggggaacgcaaagcaagccctttctgttatc
attaatagcttaggagatatagaagaggccatagaattcgtaagcatgcaacaagatgat
gaactctgggaagaactgataaagcaaagttttcataagcctgaaatggttggtgtactg
ttagagcatactgtaggaaatcttgatcccctttacattgtcaatatgttgccaaatggc
ctggagatacctcgtctgagggatcgtctggtcaagattgtgacagactacaggacagag
acttctcttagacatgggtgcaatgatatactcaaggctgattgcgtgaacttgttagtt
aaatattacaaagaagcgaagcgcgctgtttgcttgagtgatgaagtagatgaggcatct
tcccataggggtgagaagagggcttcacatctgggagagagagtaatgagcatgaaatcc
atggaggttaagtctaaaaccaggggaggtggaaggtgttgcatatgtttcgatccattt
tctatacagaatgtatcaatcattgccttcttttgttgtcatacctatcatacaacttgt
cttatggagtccaccatttccatcggtggaaaaaaagaggcgggagctgctgcccatggg
actgtctcatatgatgaatatgataatggcgttcgcgatgatgatgaggaggaggaggat
aaggacgaggacgaggatgcctcaggtgccccgcggatgcgttgtattttatgtaccaca
gctgcaggttaa
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