Nicotiana tomentosiformis: 104103286
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Entry
104103286 CDS
T05025
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04120
Ubiquitin mediated proteolysis
nto04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104103286
04120 Ubiquitin mediated proteolysis
104103286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nto04121
]
104103286
Enzymes [BR:
nto01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104103286
Ubiquitin system [BR:
nto04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104103286
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-RING_11
zf-ANAPC11
zf-RING_16
zf-RING_5
zf-RING_Vps41
FlxA
zf-C3HC4_4
DUF6792
U-box_ZFPL1
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
104103286
NCBI-ProteinID:
XP_070033526
LinkDB
All DBs
Position
6:complement(64792800..64800288)
Genome browser
AA seq
484 aa
AA seq
DB search
MMRLQTYAGLSVMATLAVIYHPFSSRGQFYPAMVYLSTSKISLVLLLNMGLAIMCILWQL
TKKVFLGTLREAEVERLNEQSWRELMEILFAITIFRQDFSVIFLAMVTGLLFIKSLHWLA
QKRVEYIETTPAVTKLSHIRIVSFMGFLLLIDSIFLYNYMNHLIQTRQASVSLFFAFEYM
ILTTTTVATFVKYTFHVCDMLMEGQWERKAVYTFYLELIRDLLHLTMYMCFFLMIFINYG
VPLHLIRELYETFRNFKSRVADYIRYRKITSNMNDRFPDATPEELNGGDTICIICREEMT
TAKKLVCGHLFHVNCLRSWLERQHTCPTCRALVVPPENGTDVAGSRYAQQGPGTSFTSQG
SQADPRTNSHVSQHQARLQAAAAAAAIYEKSIVYPSAQMLPCYLGANMPFGDSSWNNLST
SDTQLEAHRIFLQQQIEVLRSQLMLLRSSKTQKAAAAVGASDVKGKAISFESSQKGQAEG
QTGS
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgatgagactacaaacttatgcggggcttagtgtaatggctacactagctgtcatttat
catccctttagcagtagaggccagttttacccagcaatggtttatttatcgacatctaag
atcagtctggtgcttctcctcaacatgggtctggccattatgtgcattttatggcagcta
accaagaaagttttccttggtactcttcgggaggcagaggtggagaggctaaatgaacaa
tcatggcgggaactcatggaaatactttttgcaattactattttccgccaagacttctct
gtgatttttcttgccatggttaccggactattgtttatcaagtctttgcattggttggct
cagaaacgggttgagtatattgaaacaactccagcggttactaagttgtcccacattcga
atagtctctttcatgggcttcctcctcctcattgatagtatctttttgtacaactacatg
aaccatttgatacagacaagacaggcttctgtttctctcttctttgcatttgagtacatg
atactcactacaacaactgttgcaacatttgtgaaatatacattccatgtatgtgacatg
cttatggaaggacaatgggagaggaaggccgtatatactttctacttggagcttattcgg
gacttgctccacttgaccatgtacatgtgcttcttcctcatgattttcatcaattatggt
gtgcctctgcacttgattcgggaactttatgagacattccgcaacttcaagagtcgagtt
gctgattacatacgctatcgaaaaatcacttcaaatatgaatgatcgttttccagatgct
acaccggaagagctcaatggaggtgataccatctgtatcatttgtcgtgaggagatgacc
actgccaagaaacttgtttgtggacatctctttcatgttaattgcctccggtcatggcta
gaacgtcagcacacatgtcctacatgcagagcccttgttgtaccacctgaaaatgggact
gatgttgcaggatctcgatatgctcagcaaggcccaggaacaagttttacatctcaaggt
tcgcaagcagatcccaggacaaacagccatgttagccagcaccaggctagactccaagct
gcagctgctgctgctgcaatttatgagaagtccattgtttatccttctgcacagatgcta
ccctgctatcttggtgctaacatgccttttggagatagttcttggaacaaccttagtact
tcagatactcaactcgaggcccataggatattcttacagcagcagattgaggttctgcga
agccagctcatgcttctacggagttcaaagacacagaaagcagctgctgctgtaggagct
tcagatgtcaagggaaaagcaatttcgtttgagagttctcaaaaaggacaggctgaaggt
cagacaggttcttga
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