Nicotiana tomentosiformis: 104103305
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Entry
104103305 CDS
T05025
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104103305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104103305
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104103305
mRNA cycle factors
Common to processing body (P body) and stress granule
104103305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
104103305
NCBI-ProteinID:
XP_009609495
LinkDB
All DBs
Position
2:7739148..7746557
Genome browser
AA seq
973 aa
AA seq
DB search
MMAIPMDNSLDHSSREHVQRLFNKNADLENKRRKAAQARVSSDPNAWQQMRENYEAIILE
DHAFSEQHEIEYALWQLHYRRIEELRARFNAALASNGSTTSQNGKGPPRSGTDSVTKIRT
QLKTFLSEATGFYHDLMVKIRAKYGLPLGGFSDDPENQIPSFKDGKKPVELKKGLISCHR
CLIYLGDLARYKGLYGEGESKVRDFAAASSYYLQASSLWPSSGNPHHQLAILASYSSDEL
VAIYRYFRSLAVENPFTTARDNLIIAFEKNRQCYSQLPRDAKALFIKAEPSRTTGKGRGK
CETRKPLKDVKVEASLPKEKASSISEIFKTFRMGFVRLNGILFTRTSLETFEEVLSSVKT
DLLELLSSGSDEKYNFGLDAADCRLAIVRLVAILIFTIHNVIRESDNQSYSEILQRSVLL
QNAFTAAFEFMGHVVERCIQLNDPSSSFLLPGVLVFVEWLACHQDIALGNESEEKQARAR
SFFWKNCITFFNKLLSTGSKFVDEDEDETCFFNMSRYDEGESGNRLALPEDFELRGFVPL
LPAQLILDFSRKHSFGGDSGSKEKKVRLQRMIAAGKALANVVRVGEEGIYFDTRGKKFVI
GVEPQTSDDYQLNGSREVTKLIGIELESPDAGLLNVGDLQPKQQLYVECEEEDEVIVFKP
SVMEKVNGISSNTMTLAVPVSVISAASVPSGASMASVDICSEMGLFSSALDGLSLQNAWS
TNVRQPTSIAHTNAQYVQPIQTSASMWSVEQDAVMNGLVGGLNLMGNGLTTEAELLNHPE
MVPPAAYSVPLPRSVNFSTANNIHFQVPEAAIPSTFSSLTSSVAGSGSMSMKSSSVISTG
MKKNPVSRPVRHLGPPPGFGSAASKVDDSSSALTLRNENNPISRMDDYSWLNGYQLPSTH
QSIGYNNSHNHSTQTYHSVSNSGSLVGVVSFPFPGKQVPPVHMQSDIQKANQQSVALPQQ
YRGQSLWQDRYLV
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgatggccattccaatggataacagtttagatcattcgtcgcgggaacacgttcagcgc
ctcttcaataagaatgcggatttggagaataagcgtagaaaagcagcacaagcaagagtt
tcttctgacccgaatgcatggcaacaaatgcgggaaaactatgaagctatcatccttgag
gatcatgctttttctgaacaacatgaaatagaatatgccttgtggcagttacattataga
agaattgaggaactccgtgcacgcttcaatgctgcactagcttcaaatggatcaaccact
tctcagaatgggaaaggtccacctcgcagtgggacagatagcgtcacaaagattcgcacg
cagttaaaaacttttctctcagaagcaactggattttatcatgatttgatggtgaagatc
agggcaaagtatggcctgccactaggaggtttctctgatgatccagagaatcagattcct
tcttttaaagatggcaaaaaacctgtggagttgaagaaaggcttgatatcctgccatcgg
tgtttgatttatctgggtgatcttgctcggtacaaaggcttatatggtgagggtgaatct
aaagttcgcgactttgcagcagcatcaagttattacctgcaagcttcttcactttggcct
tcaagtggcaatcctcatcatcagcttgcaatactggcttcctattccagtgatgagttg
gtggcaatctatcggtactttcgtagtcttgcagtagagaatccttttaccactgcaagg
gacaacttaatcattgcgttcgagaagaatcgtcagtgttactcccagctgccaagggat
gctaaggctttgttcatcaaggcagaaccttcacgtacaactggaaaaggacgaggtaaa
tgtgaaacaaggaagcctctgaaagatgtaaaggttgaagcaagtttacccaaggaaaaa
gcttcaagtatatctgaaatcttcaaaaccttcaggatgggattcgttcggttgaatggt
atcctcttcacgcgcactagcttggagacgtttgaagaagtgctgtcatcggttaaaact
gatctgcttgagcttctctcttctgggtctgatgagaagtataattttggtttagatgct
gcagactgcagactggcaattgtcaggctcgtcgccatcttaatattcaccatccataat
gtgataagggaaagtgataatcaatcatattctgagattctacagagatcagttcttcta
caaaatgcatttactgctgcttttgagttcatgggtcatgtggttgagagatgtatccaa
ttaaatgatccctcatctagcttcttattgcctggtgttttggttttcgtagaatggttg
gcgtgccatcaagatattgcacttggtaatgaatcagaggaaaaacaagcaagggctaga
tcttttttctggaagaactgcatcactttctttaataagctcttgtcgactgggtctaag
tttgtcgatgaagatgaagatgaaacatgttttttcaatatgagcaggtatgatgaaggt
gagagtggtaatcgtcttgcgttgccggaagactttgaacttagaggatttgttcctctt
cttccagctcagcttatcctggacttctcaaggaaacattcttttggtggtgatagtgga
agtaaagagaagaaggtacgtcttcagaggatgatagcagctggaaaggctcttgctaat
gtggtccgggtcggagaagagggaatatattttgacaccaggggaaagaaatttgtcatt
ggcgttgagccccaaacttctgatgattatcaacttaatggctccagggaagttactaaa
ttaattggtattgaactggaaagtccagatgctggactgttgaatgtcggagatctgcag
ccaaagcagcaattgtatgtggaatgtgaggaagaagacgaagttatcgtttttaagccg
tcagtgatggaaaaagtgaatggcatctcttcaaatacaatgaccttagcggttcctgta
tctgttattagcgctgccagtgttccttctggtgctagcatggcttctgttgatatctgt
agtgagatggggctattttcatctgcacttgatggattgagcttgcagaatgcttggagt
acaaatgtaaggcagccaacaagcattgctcataccaatgcccaatatgtgcagccaatc
caaacaagtgcttccatgtggtctgtagagcaagatgctgttatgaatggattggtgggg
ggccttaacttgatgggaaatgggctaaccacagaagctgagttgctaaatcatccagaa
atggttccacctgcagcatattcagtccctttaccccggtctgtgaattttagcactgca
aataatattcatttccaggttccagaggctgctataccatctaccttcagttcacttaca
tcctcagtagctggttccggtagcatgtcaatgaaatcttcatcagttatctcgacagga
atgaagaaaaatccagtgagccgacctgttaggcatctgggtccacctccagggtttggt
tctgctgcttcgaaagtagatgactcttcatctgccttgaccttaaggaatgaaaacaat
cccatctctcgtatggatgattatagctggttgaacggatatcagttaccttcaacacat
cagagcattggttacaataactctcacaatcattcaacacaaacataccactctgtgagc
aacagtggtagcttagtcggggtggttagcttccctttccctgggaaacaggtgccccct
gtgcacatgcagtcagatattcagaaagcaaatcaacaatctgttgcactgcctcagcag
tatcgaggacagtccctgtggcaggatcgttaccttgtgtga
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