Nicotiana tomentosiformis: 104104511
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Entry
104104511 CDS
T05025
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104104511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104104511
03009 Ribosome biogenesis [BR:
nto03009
]
104104511
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104104511
Spliceosome [BR:
nto03041
]
Complex A
U1 snRNP components
U1 related factors
104104511
Complex B
104104511
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
Pre-60S particles
Helicases
104104511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104104511
NCBI-ProteinID:
XP_009610912
LinkDB
All DBs
Position
2:95804307..95812121
Genome browser
AA seq
750 aa
AA seq
DB search
MAATATASSSGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPVAPSHGGTA
PQHKSSVSVSSSVQRPSQGQRPDRDDDNEYNRGSNGGLSKLSSGEDIQTARGSELSRDET
SVPKSYSAPAAASNISPDAYRRQHEISVTGGDVPPPFTSFEATGFPSELLREIHQAGFPA
PSPIQAQSWPIALQGRDIVAVAKTGSGKTLGFLLPGFIHLKRRRNNPQSGPTILVLSPTR
ELATQIQDEAVKFGRSSKISCTCLYGGAPKGPQLRDLDRGIDIVVATPGRLNDILEMRRI
RLDQISYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMFTATWPKEVRKIAADLLVNP
VQVNIGNVDELVANKSITQYVEVLSYMEKQRRLDQILRSQEPGSKIIIFCATKKMCDQLA
RNLTRPFGAAAIHGDKSQGERDHVLSQFRTGRSPVLVATDVAARGLDVKDIRVVINFDFP
TGVEDYVHRIGRTGRAGATGEAYTFFCDQDAKHASDLIKILEGANQQVPTELRDMASRGG
GMGGARRQWGSGPGGREGGRGGRYDSGYGGRDGGRGGWGAPSSERSGRGYDSDSRDSDRY
GHGSRDTDAPPSFHARSFHETMMQAQQRRGRSRSRSPNKGSGWGDTKSRERSRSRSAERF
DQAPPRQAPVGRSFHESMMGRSGSSPVASKHQSPSYSDKRSPSAGDCQKGWEKEKSPPRW
QGDGKFGNGPRAYNGEEEEGMIPEDVETRA
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgctactgcatcttcttctggtccgcgttacgcaccagaggaccccacc
ctcccaaaaccttggaaaggcctggttgatggtaagactggatatctctatttttggaat
ccagagaccaatgttacccaatatgagaggcctgttgctccttcccatgggggtactgct
ccacaacataaatcatcggtatctgtaagttcatcagttcaaaggccttctcaaggtcaa
cgtcctgaccgtgatgatgacaatgaatacaacagaggtagcaatggtggcttgagcaag
ctttcttctggtgaggatattcagactgcaagaggaagtgagctttcccgcgatgaaaca
tctgtacctaaaagctatagtgctccagctgctgcaagtaacatatctccagacgcctat
cggcgtcagcatgaaatttctgttacaggaggtgacgtgcccccgcctttcacatcattt
gaagcgactgggtttccttcggagcttttgagggagatacatcaagctgggtttcctgct
ccttccccgatacaggcacagtcctggcccattgcacttcagggccgcgacatagtagct
gttgcaaagactggatctgggaaaactttgggtttcttgcttcctggctttattcatcta
aaacgacgtcgcaataatcctcaatcaggccctactattttggttctgtcgcctacaaga
gagttagctacacagatacaagacgaagctgtgaagtttggtagatcgtcaaagatatct
tgcacgtgtctatatggaggcgccccaaaaggccctcagctacgagatctggatagggga
atagatattgttgtcgctacccctggtcgtttgaatgatattttggagatgagaagaatt
aggctggatcaaatttcttacttggtgttagatgaagcggatcgtatgctggacatggga
tttgaacctcagataaggaagattgtgaaagaggtgccgacacgacggcagacactgatg
ttcacagcgacatggccaaaggaggtccgtaaaattgcagctgatctattggttaatcca
gttcaggttaacattgggaatgttgatgaacttgttgcaaacaagtctataacacagtac
gttgaagtcttgtcatatatggagaaacaaaggcggctagaccagatcttgagatcccaa
gaaccaggatcaaaaatcatcatcttctgtgcaacaaagaaaatgtgtgaccaacttgct
cgcaatcttacacgcccatttggagctgctgcaattcatggtgataaatctcagggtgag
agggatcatgtattgagccagttccgcacgggtagatcccccgttcttgtcgccacagat
gttgctgcccggggcttggatgtcaaagatatcagggtggtgatcaactttgactttcct
actggagtagaggattatgttcacagaataggaagaaccggtcgggctggtgcgactggt
gaggcctacacatttttttgtgaccaggatgctaagcatgcttcagatcttattaaaatt
ttagaaggagcaaatcagcaagtgcctactgaactacgtgacatggcttctcgaggtggt
ggtatgggaggggctaggcgtcaatggggttctggcccaggcggacgtgaaggaggacgt
gggggacgttatgattccggctatggtggacgagatggaggaaggggtggttggggagcc
ccatcatcggaaagaagtggacgtggttatgactcggattcacgtgacagtgatagatat
ggtcatggatctcgtgataccgacgctccaccgagcttccacgctcgtagcttccatgaa
actatgatgcaggctcaacagagacgtggtcgaagtcggagcagaagcccaaataaaggt
tcaggatggggtgatacaaaaagcagggaacgcagtcgcagccgtagtgctgaaagattt
gatcaggctcctcctcgtcaagccccagttggacgcagttttcatgaaagcatgatgggg
cgcagtggatcatccccagtggcctcaaaacaccaatcaccctcttactctgataaacga
tctccatcagctggtgattgccaaaagggctgggaaaaagaaaaatctccacctagatgg
caaggtgatgggaaatttggcaatggacctcgtgcttacaatggggaggaggaagaaggt
atgattcctgaagacgtcgaaacgagggcctaa
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