Nicotiana tomentosiformis: 104104671
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Entry
104104671 CDS
T05025
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104104671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104104671
03009 Ribosome biogenesis [BR:
nto03009
]
104104671
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104104671
Spliceosome [BR:
nto03041
]
Complex A
U2 snRNP components
U2 related factors
104104671
Complex B
104104671
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104104671
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
90S particles
Helicases
104104671
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
AAA_30
T2SSE
FtsK_SpoIIIE
Flavi_DEAD
AAA_7
PhoH
UvrD-helicase
SLFN-g3_helicase
AAA_29
TsaE
NACHT
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
104104671
NCBI-ProteinID:
XP_009611106
LinkDB
All DBs
Position
Unknown
AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDDMPAKKVNVGSLNGSMTPSINKWNGKPYSQRFYEILEKRKTLPV
WHQKEEFLQALKSNQTLILVGETGSGKTTQIPQFVLDAVEVETADKRRKYMIGCTQPRRV
AAMSVSRRVAEEMDVAIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMADPLLERYKV
IILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRL
HPVEIFYTQEPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKINKEVSNLG
DQVGPVKAVPLYSTLPPAMQQKIFESAPPPVVEGGPAGRKIVVSTNIAETSLTIDGIVYV
IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDLQP
QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLT
RLGEIMSEFPLDPQMAKMLVVSSEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKNR
FGHIDGDHLTLLNVYHAYKQNTEDPQWCYENFINQRALKSADNVRQQLSRIMARFNLKLC
STDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIY
NEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKREREKDESKS
KR
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgggaacagagcggaagaggaaagtaagcttgtttgatgtggtggatgacatgccagcg
aagaaagtgaatgttggaagcttaaacggtagcatgacgccttcgattaataagtggaac
gggaagccttactcacagagattctatgagatattggagaaaaggaagactcttccggtt
tggcatcaaaaggaggagtttttacaggctttaaaatctaatcaaaccctaattttggtt
ggtgaaaccggtagtggtaaaaccactcagattccgcagtttgttttagatgctgttgaa
gttgagacggctgataagcgccggaagtatatgattggttgcactcaacctcggagggtg
gctgcaatgtccgtgtctcgtcgagttgctgaagagatggatgttgcaattggggaagaa
gttggatatagcatccgttttgaagactgcagtagtgctagaactgttttaaaatactta
acagatggtatgcttttaagagaagcaatggcagatcctctattggaacgctacaaagta
atcattctggatgaagcccatgaaagaactttggcaacagatgtcctgtttgggcttctt
aaagaggtgttgaaaaatagaccagacctaaagcttgttgttatgagtgccacacttgag
gcagagaagtttcagggttacttctttggtgcgcctctcatgaaagtgcctggaaggctt
catcctgtggaaattttctacactcaggagcctgagagagattatctcgaggctgccatt
cggactgtggtgcagatacacacgtgtgaacctcctggtgacatacttgttttccttacc
ggagaggaggagattgaagatgcttgtcgcaaaatcaataaggaggttagtaatttgggt
gatcaagtgggcccggttaaagcggtgcctctttattctacacttcccccagctatgcag
caaaagatatttgaatcagccccacccccggtggtggagggtggtcctgctggcaggaag
attgttgtgtcaaccaacattgcagagacatctttgacaattgatggcattgtttatgtc
atagatccgggatttgctaaacaaaaagtttataacccaagggtgcgtgttgaatctttg
ttggtgtctcctatttcgaaggccagcgcccaccagagatcaggacgtgctggaagaacg
cagccagggaaatgctttagactttacacagagaaaagtttccataacgaccttcaacca
cagacctatccagaaatacttcggtcaaacttggccaatacagttctaactttgaagaag
ttaggtattgatgacctggttcattttgattttatggatcctcctgccccagagacattg
atgagagcactggaggttttgaattacttgggagcattggatgatgaggggaacttgact
aggttgggtgagattatgagtgaatttcctcttgatcctcagatggcaaaaatgcttgtt
gtcagctcagaattcaactgctccaatgaaatcctctcaatatctgccatgctatcagta
cccaattgctttgtccggcctagggaggctcagaaagctgcagatgaagcaaagaatcgg
ttcggtcacatagatggggatcatttgacgttgctgaatgtgtatcatgcctacaagcag
aacacggaagaccctcaatggtgctacgagaatttcatcaatcagagggctctcaaatca
gctgacaatgtgaggcaacagctttctcgcataatggccaggttcaacctcaagttatgc
agcacagacttcaacagtcgcgactactacataaacataagaaaggctatgttagctgga
tatttcatgcaggttgctcacctagagcgtactgggcactatctgactgttaaagacaat
caagtggttcacttgcatccgtcaaattgtctggatcataagccagaatgggttatctat
aatgaatatgtcttgacaagcaggaatttcatccgtactgtgactgatattcgtggtgaa
tggttggttgatattgcaccacattactatgaccttgctaactttccgcaatgtgaggca
aaacgagttcttgagcggttatacaagaagcgagagcgagaaaaagatgaaagcaagagc
aaaagatga
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integrated database retrieval system
