Nicotiana tomentosiformis: 104106326
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Entry
104106326 CDS
T05025
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03013
Nucleocytoplasmic transport
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104106326
09122 Translation
03013 Nucleocytoplasmic transport
104106326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104106326
03041 Spliceosome [BR:
nto03041
]
104106326
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104106326
Spliceosome [BR:
nto03041
]
Complex C
Other components
EJC/TREX
104106326
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104106326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
104106326
NCBI-ProteinID:
XP_009613144
LinkDB
All DBs
Position
10:21466309..21526639
Genome browser
AA seq
1863 aa
AA seq
DB search
MSVLGLEFLFVTEECIKELKNGNSSFKFSEPLPTLRFLYELCSVMVCGELPIQKCKVALE
SVEFVDYASQEELGSSLADIVSQMAQDLSMPGENRQRLIKLAKWLVESALVPLRFLLERC
EEEFLWESEMIKIKAADLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLSQMPEGS
MQNASTATVGIIKSLIGHFDLDPNRVFDIVLECFEHQPGNTTFLDLIPIFPKSHASQILG
FKFQYYQRLEVNDPVPSGLYQLTALLVKRDFIDVDSIYAHLLPKEEDAFDHYNAFSAKRL
DEANRIGRINLAATGKDLMDEEKQGDVTVDLYAALDMETEAVAERSAELENSQPVGLLMG
FLEVDDWYHAHVLFDRLSHLNPAEHIQTCNVLFRLIERSISEPYDLVRKMQLLDLLPGVV
TDSMEVANSSSSRSFINLPKELFEMLSSVGPHLYRDTLLLQKVCRVLRGYYICAHQLVAS
GVAGFISQTVTIGDQIPRIHLKDARSRIEEALGGCLLPSLQLIPANPAVGLEIWELMNLL
PYEARYRLYGEWEKDDEQFPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP
MTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQSGREKLKDDGLNLC
DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKRGNGIELVFMQELIQQMANVHYTENM
TEEQLDAMAGSDTLRYQATSFGITRNNKALIKSTNRLRDSLLPKDEPMLAIPLLLLIAQH
RSVVVINAEAPYIKMVSEQFDRCHGALLQYVEFLSSAVTPTAAYALLVPALDELVHVYHL
DPEVAFLIYRPVMRLFKCQRNSDVFWPSDSDEAVRSATAEKESESSDLSAYLLLDLGSSR
KPILWTDLLDTIKTMLPSKAWNSLSPDLYATFWGLTLYDLHVPRSRYESEIAKQHAALKA
LEELSDNSSSAITKRKKDKERIQESLDRLSMELQRHEEHVTSVRRRLTREKDTWLSSCPD
TLKINMEFLQRCIFPRCTFSMPDAVYCAMFVNTLHSLGTPFFNTVNHIDVLICKTIQPMI
CCCTEYEVGRLGRFLYETLKTAYYWKGDESIYERECGNMPGFAVYYRYPNSQRVTYGQFI
KVHWKWSQRITRLLIQCLESTEYMEIRNALILLTKISNVFPVTRKSGINLEKRVAKIKSD
EREDLKVLATGVAAALASRKPSWVTDEEFGMGYLELKPAATPASKSSTVNSVSIPNGSGP
SVSQVEPSVGRSVAAGRVVDGKLDRLESSMPKPDLGQVKLKCSQSVNGLDLLSMPSAALH
SGTPSQRHVDEYTSRPLEENTIKAASKMYGEQEGRATRKRAAPAGSLSKQQKHDIEKDDK
SGKAVGRATGATYVDVGHPSEKRASGNVNVFATVSGNGSLLSAVAKSAASLMRSPDLSSE
SKAELAATKSAELRFSAGKDDGNESSDVHKQSSSRLVHSPRQDASRANEKVQKRSSPTED
LDRLNKRRKGELDSRDIDGGDVRSSERERVIDARAADKLHAADYDKHGSDDQILNRASEK
PLDRSKDKGGERHEKDHKERVDRPDKSRGDDTLSEKSRDRSTERHGRERSVERVLERGAD
RNFDRLSKDERIKDDRSKPRHSEASVEKSPTDDRFHNQNLPPPPPLPPHLVPQSINVGRR
DDDSDRRFGTARHSQRLSPRHDERERRRSEENNALLQEDLKRRREEDFRDRKREERELPM
KVEEREREREKASLVKEDLDPNASKRRKLKREHMASEPGEYSPATHPPALSINMSQPYDG
RDRGERKGVIVQQRPGYLDEPGLRLHGKESASKAPRRDLDPMYDREWDEDKRQRAEPKRR
HRK
NT seq
5592 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttttaggtttggagtttttgttcgttacagaggagtgcatcaaagagttgaaa
aatggcaacagcagcttcaagttctctgaaccgcttcccactctgcgctttctctatgag
ctctgctccgttatggtttgtggtgaattgcccattcagaaatgtaaagtggcattggag
tctgtggagtttgtggattatgcttcccaggaggagctagggtcgagtttggctgatatt
gttagccaaatggctcaggatctttcgatgccgggagaaaatcgtcagcgtcttatcaag
ctggcaaaatggctcgtggaatctgctttggttcctttgagatttcttctggagcgatgt
gaggaagagtttttgtgggaatctgagatgatcaagataaaggctgcagatttgaagtcg
aaagaggttagggtaaacactcgtcttctttatcagcaaacaaagtttaaccttctccgg
gaagagagtgaaggctacgccaagctggtcacgctcctttctcaaatgccagagggttct
atgcaaaatgcttcaactgctacggttggcataatcaagtcattgattgggcacttcgat
ctggatccaaaccgagtctttgatattgttttggagtgttttgaacatcagcctggtaat
accacatttttggacttgattcccatatttcccaagtcccatgcctcccagattctgggg
tttaagtttcaatactaccaacgactggaagtcaatgatcccgttcctagtggtctttat
cagctaacagccttgctggtgaaaagagacttcattgatgttgacagcatttatgcacat
ttgcttcccaaggaggaggatgctttcgaccattacaatgcattttcagctaagagactt
gatgaggctaacagaataggtagaataaatcttgctgctactgggaaggatctcatggat
gaagagaaacaaggagatgtgacagtggatctgtatgctgcattggacatggagacagag
gcagttgccgagcgttccgcagagctagaaaatagtcaacccgtgggcttgcttatggga
tttcttgaagtggatgactggtatcatgctcatgtgttgtttgaccgtctctcacatctt
aatccagcagagcatatacaaacatgcaatgtattattcaggctcattgaaagatcaata
tctgaaccgtatgaccttgttcgcaagatgcaacttttggatttacttcctggagtcgtc
actgactctatggaagtggcaaattcgtcaagcagtagatcttttatcaatcttccaaaa
gagctttttgagatgctttcttctgttggacctcatctttatcgagatacattgttgcta
cagaaggtatgcagagtgttaagaggttattacatttgtgcacatcagcttgtcgctagt
ggtgtggcaggttttatctcccaaactgttacaattggagatcaaattcctcgtatacac
ctgaaggatgctaggtcaagaattgaggaagcattaggaggatgcttgcttccttcctta
cagttgataccagcaaatcctgcagttggactagagatctgggaactaatgaatctcctt
ccgtatgaggcacgttatcgtttatatggtgaatgggagaaagatgatgagcaatttcca
atgcttttggcggcaaggcaaacagcaaagttggacactaggaggatcctgaagcgcctt
gcaaaagaaaatctaaagcagctcggtcgaatggttgccaaacttgctcatgctaatcca
atgacagtattgcgaacaatcgttcaccagattgaggcttacagggatatgattacacct
gttgtagacgcttttaagtatctgactcagctggagtatgatattttggaatatgttgtt
atcgaacggttggcacaaagtgggagagagaagctgaaagatgatggtcttaatttgtgc
gattggcttcagtctttggcatcattttggggtcacctgtgtaaaaagtacccgtcaatg
gaattgaggggcctttttcagtatcttgttaatcagttgaagagaggaaacggtattgag
cttgtgttcatgcaggagctcattcagcaaatggctaatgtacactatacagagaacatg
acagaggaacaattggatgccatggctggaagtgatactctacgctatcaggccacctca
ttcggaataacccggaacaataaggcattgattaaatcgactaacaggctgagggattct
ttgctcccaaaagatgaaccaatgttggcaattccactgttgctactcattgctcaacat
cgttctgtggtagttattaatgcggaagctccatacattaaaatggtcagtgaacagttt
gataggtgtcatggagcccttcttcagtatgttgaatttttgtctagtgcggtgactcca
acagctgcctatgctcttctcgttccagctcttgatgagcttgtacatgtgtatcatctt
gatcctgaggtagcatttttgatttatcggcctgttatgaggctcttcaagtgtcagaga
aattcagatgtcttttggccttcagatagtgatgaagcagtgaggtcagcaactgctgaa
aaggagtctgaaagctcagatttatctgcctacttactccttgatcttggttcttctcgg
aaacctattttatggacagatcttcttgataccatcaaaacaatgttgccttcaaaagcc
tggaatagcttgtccccagacttgtatgccaccttctggggtcttacactctatgatctt
catgttcctagatcccgttacgagtctgaaattgctaagcagcatgctgctcttaaagct
ctggaagaactttctgataattcaagttctgcaatcacaaaaaggaaaaaagataaagaa
agaattcaagagtcactagatcggttaagtatggagcttcagaggcatgaagaacatgtt
acatctgttcgcagacgactgactcgtgaaaaggatacatggctgagttcgtgtcctgat
actttaaagatcaacatggagttccttcagcggtgtatatttccacgctgtacgttcagt
atgccagacgctgtgtattgcgccatgtttgttaatactcttcattcccttggaacaccc
ttctttaacactgtgaaccacatagacgttttgatatgtaagacaatacaacccatgatc
tgttgttgcaccgagtatgaagtaggtcgactaggaagatttttgtatgagacattgaag
actgcttattattggaagggtgatgaatcaatttatgaacgtgaatgtggaaatatgcct
ggatttgccgtctattacagatatccaaacagccagcgtgttacatatggccaatttatt
aaggtgcactggaagtggagccaaaggatcacgaggttgctcatacagtgtctggaatca
actgagtacatggagatcagaaatgctcttattttattgacaaagatctcgaatgtcttt
ccagttactcggaagagtggaataaaccttgagaagagggttgccaaaattaaatctgat
gaaagagaggatctcaaagtattggctacaggggttgctgcagctctggcttctagaaag
ccatcatgggtgacagatgaagagtttggtatgggttacctagaactaaaacctgcggca
acccccgcttctaaatcttcgactgttaattcagtatccataccgaatgggagtggccct
agtgtttctcaagttgagccttctgttggaagaagtgtggcagcaggaagagtagttgat
ggcaagttggataggctagagagttctatgccaaaacctgacttaggtcaggtaaaactg
aaatgtagtcaatcagttaatggactggatttgctatctatgccatctgctgccctgcac
tctggtactccaagtcaaagacatgtagatgagtatacgagtagaccattggaagagaat
accataaaagctgcttctaagatgtatggcgagcaggagggaagagctacacgcaagcga
gctgctcctgctggatctctttcaaagcaacaaaagcatgatattgaaaaagacgacaag
tctgggaaagctgttggaagagcaactggagctacttatgttgatgttggtcatccttct
gagaaaagagcaagtgggaatgtcaatgtttttgctacagtttcagggaatggtagcttg
ttgtctgctgtagctaaaagtgcagcttcattaatgagatcaccagatctttcaagtgaa
tcgaaagcagaacttgcagctaccaaatcagctgagctgaggttttctgctggaaaagat
gatggcaatgaaagctctgatgtgcataagcagtcctcatcgcgtttggtccattcgcct
cggcaggatgcttctagagctaatgaaaaagtacagaagagatctagccccacggaagat
cttgatagactgaataaacgccggaaaggtgaacttgacagtagagatattgatggtggt
gatgttcgttcatctgagagagagcgggtaatagatgcaagagctgctgataaacttcat
gcagcagattatgataaacatggatcggatgatcaaatattgaaccgggcctctgaaaag
cctcttgatagatccaaagataagggtggtgaaagacatgagaaagaccacaaagaaaga
gtggaccgtcctgacaagtctcgtggggatgatacgttgtctgaaaaatcaagagatagg
tcgacagagcggcatggaagagaacgttctgttgaaagagtactggagagaggtgctgat
aggaacttcgataggttaagtaaggatgaaagaatcaaagatgataggagcaagccgcga
catagtgaagcatctgtagagaaatctcctacagatgatcggtttcacaatcaaaatttg
cctccacctccaccacttccgcctcacctggtcccccaatccattaatgtaggcagaaga
gatgacgattctgatagacgttttggaacagccaggcatagtcaaagactttctccaagg
catgatgagagagagagacggcgatcagaagagaataatgcattattgcaggaagatttg
aagcgaaggagagaagaagattttcgagatagaaagcgggaagaaagagaacttccaatg
aaggtagaggagagggaaagagagagggagaaagcaagcctcgtgaaagaggatttggat
ccaaatgcctcaaagaggcgcaaacttaagagagagcatatggcttcagaacctggcgag
tattcacccgctactcatcctcctgccctttctattaatatgtcacagccctatgatgga
agagataggggagagcggaagggtgtcattgttcagcagcgtccaggttacttggacgag
ccaggtcttaggcttcacggaaaagaaagtgccagcaaagcacctcgtcgtgatcttgac
cctatgtatgacagagagtgggatgaggacaagaggcaaagagctgagcccaagaggcgg
catcgcaagtaa
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