KEGG   Nicotiana tomentosiformis: 104108326
Entry
104108326         CDS       T05025                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03030  DNA replication
nto03410  Base excision repair
nto03420  Nucleotide excision repair
nto03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104108326
   03410 Base excision repair
    104108326
   03420 Nucleotide excision repair
    104108326
   03430 Mismatch repair
    104108326
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nto03032]
    104108326
   03036 Chromosome and associated proteins [BR:nto03036]
    104108326
   03400 DNA repair and recombination proteins [BR:nto03400]
    104108326
DNA replication proteins [BR:nto03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104108326
  DNA Replication Termination Factors
   ELG1-RFC complex
    104108326
Chromosome and associated proteins [BR:nto03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104108326
DNA repair and recombination proteins [BR:nto03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104108326
  Check point factors
   HRAD17(Rad24)-RFC complex
    104108326
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 Mg_chelatase Sigma54_activ_2 RsgA_GTPase AAA_16 RuvB_N AAA_23 AAA_5 AAA_22 DUF815 ABC_tran AAA_29 AAA_24 AAA_2 T2SSE TsaE
Other DBs
NCBI-GeneID: 104108326
NCBI-ProteinID: XP_009615627
LinkDB
Position
10:10646330..10673285
AA seq 354 aa
MLWVDKYRPKTLDKVIVHQDVAQNLQKLVSEGDCPHLLFYGPSGSGKKTLIMALLRQIFG
PSADKVKVENKIWKVDAGTRTIDVELTTLSSTHHVELSPSDAGFQDRYVVQEIIKEMAKN
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCSNSSSKVTEAVRSR
CLNVRINAPMEEEIVNVLDFIAKKEGLQLPQGFAARIAEKSNRNLRRAVLTFETCRVQQY
PFTNNQAIPPMDWEQYLSEIASDIMKEQSPKRLFEVRGKLYELLTNCIPPEIILKRLLFE
LLKKLDSELKHEVSHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKSFLISTFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggttgacaagtaccgccccaaaaccctagacaaagttattgtccaccaggat
gttgctcaaaatcttcaaaagctggtgtcagagggagattgtcctcatcttctcttttat
ggtccttccgggtcaggaaagaaaactctgattatggcacttcttaggcagatttttggt
ccaagtgccgataaggttaaggttgagaacaagatttggaaagttgatgctggtacgagg
acaattgatgtggagcttacaacattgtcaagcacccaccacgtggaattgagtccaagt
gatgctggatttcaggatagatacgttgttcaagagataatcaaagaaatggccaagaat
agaccaattgacactaaaggaaagaaggggtttaaagtattagtgctaaatgaagttgac
aagctctcaagagaagcacaacattctcttcgaagaacaatggagaagtacagtgcgtcg
tgccgcctaattctatgctccaacagttcttcaaaggttactgaagcagtccgctcacga
tgccttaatgtgagaataaatgcgccaatggaggaagagattgttaatgttttggatttt
attgccaaaaaggaaggacttcagcttccacaaggatttgctgctcgtattgcggaaaag
tcaaataggaatctgaggagggcagtcttgacttttgagacttgtcgtgttcaacagtat
cccttcacaaacaaccaagctatacctccaatggactgggagcaatatctttcagaaatt
gcatcagacataatgaaagagcagagccctaaaaggttgtttgaggttaggggaaagtta
tatgaactactaacaaattgtattccacctgaaattattttgaagaggctgcttttcgaa
ctattgaagaaattggattcagagttgaagcatgaggtgtcccactgggctgcttattat
gagcataggatgcgcctgggtcagaaggctatatttcatcttgaagcatttgtggccaaa
ttcatgagcatctacaagagtttcctcatttcaacatttggctag

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