Nicotiana tomentosiformis: 104108817
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Entry
104108817 CDS
T05025
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A isoform X1
KO
K07466
replication factor A1
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03030
DNA replication
nto03420
Nucleotide excision repair
nto03430
Mismatch repair
nto03440
Homologous recombination
nto03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104108817
03420 Nucleotide excision repair
104108817
03430 Mismatch repair
104108817
03440 Homologous recombination
104108817
03460 Fanconi anemia pathway
104108817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nto03000
]
104108817
03032 DNA replication proteins [BR:
nto03032
]
104108817
03400 DNA repair and recombination proteins [BR:
nto03400
]
104108817
Transcription factors [BR:
nto03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104108817
DNA replication proteins [BR:
nto03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104108817
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104108817
MMR (mismatch excision repair)
104108817
DSBR (double strand breaks repair)
HR (homologous recombination)
104108817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
DUF223
Motif
Other DBs
NCBI-GeneID:
104108817
NCBI-ProteinID:
XP_009616238
LinkDB
All DBs
Position
5:complement(44641013..44644871)
Genome browser
AA seq
638 aa
AA seq
DB search
MPVNLTANAIPAIIAGDVNSKPVVQVLDIKLIGAAADRYGLLISDSESSQQAMLAAQLND
RVKTGRVRKTSVIQLIEYICTTVKNRKIIVVINMETIIPECEIIGNPKALVESNFGAQKA
ISNGVSGSAIFNNGNLSAQRSGQTSFANSNNLSSLHSGNSMQNYPPAIQPAYQPPPNYKS
HGTIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNSRGDGKVFSFDLLDSDG
GEIRVTCFNAVVDRFYDKIEAGKVYMISKGSLKPAQKNFNHLKNEWEIFLEITSTVDVCP
DEDATIPRQQFSFRPISDIESAESNSIIDVIGIVIAVNPSVPILRKNGMETQRRILNLKD
QSRRSVELTLWGDFCNREGQKLQEMAEAGFSPVLAVKAAKVSDFTGKSIGTISSTQLFID
PDFAEAQTLREWFDQGGKDVASQSISRENMPVGSKSEIRKTVSQIKDEGLGRSDKPDWIT
VKATITFIKTESFCYTACPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFEECDYRYLLQAQ
IQDHTGLTWVTAFQESGEEILGCPAKELHMMNEEADGNRFSEIIRKCLFTQFLFRLKIKE
ELYGDEQKVKITVIKAEKVKHSAESRYLLDLISKFCPS
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgaacttgacggcgaacgcgatcccggctattatcgccggcgacgtgaactca
aagccagtggttcaggtattggacatcaagctaatcggcgccgcagcggatcggtacgga
ctcctaatctcagattctgagtcgagtcagcaggctatgctggctgctcagcttaatgac
cgagtcaaaacgggccgcgttcgcaaaacctccgtcattcagttgattgagtacatttgt
accactgttaaaaatcgcaaaattattgttgtcatcaacatggaaactattatacctgaa
tgtgaaataattgggaatcctaaagcgcttgtagaatctaattttggagctcagaaagct
atatctaatggcgtttctgggtctgcaatctttaacaatggtaacttgagtgctcaaaga
tctggccaaacaagctttgctaacagcaacaatttgagctccctacattcaggtaatagc
atgcagaactacccacctgcaattcaacctgcatatcagcctcctccaaattacaaaagc
catgggacaataatgaagaatgaagcacctgcccgcattattccaattgctgctttgaac
ccctatcagggtcggtgggctattaaggctagagtgactgcaaagggggatctacgtcgc
tataataattccagaggagatggaaaggtcttctcatttgatctccttgactcagatggg
ggtgaaatacgtgtcacttgctttaatgcggttgttgatcgcttttatgacaaaattgaa
gctggaaaagtgtacatgatatcaaaaggcagcttgaaacctgctcagaagaacttcaac
catctgaagaatgaatgggaaatattcttggagataacttcaaccgtagatgtctgtcca
gatgaagatgccactataccaagacagcagttctcatttagacctattagtgacattgaa
agtgcagaaagcaattcaatcatagatgtgattggaattgtaatagctgtcaatccttct
gttccgatcctgagaaagaatggaatggaaactcaaagaagaatcttgaatctaaaggat
cagtctaggcgaagtgttgagctgacactatggggagacttctgtaacagggaaggtcaa
aagctgcaagaaatggcagaagctgggttttcccctgttttagctgtcaaagctgcaaaa
gttagtgacttcactgggaaatccattggaaccatttcttccactcaactgttcatagat
ccagattttgcagaggctcaaactctaagagaatggtttgatcagggaggaaaagatgtt
gcttctcaatctatatctagggaaaacatgcctgtaggatcaaaaagtgagatacgtaag
accgtgtctcagatcaaggatgaagggcttggtaggtcagataaaccagactggattaca
gttaaggcaactataacattcatcaaaaccgaaagcttctgttacactgcttgccctctg
atgattggagatagacaatgtaataagaaagttaccaggtcaggaaactcgagatggcaa
tgtgataggtgcaatcaagagtttgaggaatgtgattacagataccttcttcaagctcaa
attcaagatcatactgggttgacatgggtgacagctttccaggaatctggggaagagatt
ttgggttgtcccgcaaaggagctacacatgatgaatgaagaggcggatggtaacagattt
tctgaaattattagaaaatgtctctttacacaatttctattcaggcttaaaatcaaagag
gaactttatggtgatgagcagaaggtgaagattacagttatcaaggcagagaaagtgaaa
cattctgcagaaagcagatatctccttgatttaatttcaaaattctgcccttcttga
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