Nicotiana tomentosiformis: 104109114
Help
Entry
104109114 CDS
T05025
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104109114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104109114
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104109114
Spliceosome [BR:
nto03041
]
Complex C
Other components
Step II factors
104109114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
ABC_tran
nSTAND3
SLFN-g3_helicase
AAA_30
NPHP3_N
ATPase_2
FtsK_SpoIIIE
Helicase_RecD
AAA_16
AAA_29
nSTAND1
SRP54
AAA_23
T2SSE
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
104109114
NCBI-ProteinID:
XP_009616612
LinkDB
All DBs
Position
12:complement(73235617..73246836)
Genome browser
AA seq
700 aa
AA seq
DB search
MADLPIVRFEEKIIETVEKNPVVVVIGETGSGKSTQLSQMLYKRGYAKSGMIAVTQPRRV
AAVSVSRRVAQEQNVRLGEEVGYAIRFEDRTSEKTHIKYLTDGVLLRESLFNPELNQYSV
IILDEAHERSLNTDILLGLMKRLIKWRHSNLKVLITSATLDGGKVSRFFSDCPVLTVPGE
LFPVEIVHISERPKNYVEASLKTAIDIHVREPEGDILIFLTGQDDIEKLVMKLEKKIQSL
DEGSCLDALILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLEVVQISKVQAKQRAGRAGRTRPGKCYRLYPSMVYHDDFLDATVPE
IQRSSLAGTVLYLKSLDLADMDILKFDFLDSPSIESLEDALKQLYLVDAIDENGSITSLG
RKMAELPLEPSLSRTLLEANELDCLSQALTVVSMLSAETTLLPAPSKISEKKRKHTPSNL
PDGAGLGDHIQLLQIYEQWYQTDYNIDWCKENNLQVRGMVFVRDVRKQLSQIMQKIAKGS
LDVQTSKRRRDSPQEYRILRKALCIGYANQLAERSIRHNGYRPLGFKSELVQVHPSSVLK
ADEDGMLPNYVVYHELIVTSRPFMRNVCAVEMRWVAPILAKLEKLNVFKLSGGSSQPDKQ
IQEVTLNVEKKEIATIQSPEDRDSRIQAARERFLARKGQK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggccgatttacctatagttcgatttgaggagaaaatcatagaaacagtggagaaaaac
cctgtagtggtagtcattggtgagaccggttctggtaaaagtacacaactttcacaaatg
ctttataaaagagggtatgctaaatctggaatgatcgctgttactcagcctcgccgtgtt
gctgcagtttctgtttctagacgagttgcacaggagcaaaatgttcgacttggagaggaa
gtcggttatgccataagattcgaagatagaacttcggagaaaacacatatcaaatatctt
acggatggagtgctcctccgcgagagtctttttaatccggagctgaatcaatattccgtc
atcatattggatgaagcacatgagaggagtttgaacacggatatattgcttggtttaatg
aaaagattaatcaaatggcgtcactcaaacttgaaagttttgatcacatcagccactctt
gatggtggaaaggtatctaggttcttctccgactgtcccgtccttaccgtaccaggcgag
ttatttcccgtggaaatagtacacatctcagagcgccctaaaaactatgtggaggcttct
ctaaaaacagctattgatattcacgtacgggagccagaaggggacattttaatatttttg
acagggcaggatgacatagagaagttggtaatgaagttggagaagaaaattcaaagctta
gatgaaggttcttgtctggatgccttaatccttcctcttcatggatccttgccacccgag
atgcaggtgcgtgttttcagtcctccacctccaaattgtaggcggtttattgtttctaca
aatattgctgaaacgtctttgactgttgatggtgtcgtgtatgtcattgactcggggtat
gtgaagcaacggcaatataacccatcaactggcatgtactctttggaggttgttcagatt
agcaaggtgcaggcaaagcagcgtgcaggacgtgctggaaggacacgtcctggaaagtgt
tatcgtttatatccctctatggtttaccatgatgattttttggatgccaccgttcctgaa
atacaaaggtcctcattggctggaactgtactttatttgaagtcgttagatctcgccgat
atggatattctcaaatttgattttctcgactctccttccatcgagtctttagaggatgcc
ttgaagcaattatatttagtcgatgcaattgatgaaaatggttcaatcacaagccttgga
cgaaagatggctgagcttccactggaaccttctctttccaggaccttactagaggcaaat
gagttggattgcttgtcccaagcattgacagttgtttccatgttgtctgctgagaccacg
ctgcttcctgccccaagtaagatctctgagaagaagaggaagcacactccttcgaacctt
cctgatggtgctggcttgggtgatcacatccagctactccaaatttatgagcaatggtat
cagactgactacaacatagactggtgtaaagagaacaacttacaggtccgcgggatggtg
ttcgtgagagatgtcaggaaacagttatctcaaataatgcaaaaaattgctaaaggctca
ttagatgtccaaacaagcaaaagacggagagacagcccacaggagtatagaatattgagg
aaagcattgtgcattggttacgcaaatcagcttgctgagcggagcattcgacataacggg
tatcggcctcttggtttcaagtctgaactcgtacaggtccatccatcttctgtgctaaaa
gcagatgaggatgggatgcttccaaactatgtcgtctatcatgaattaatagttacttca
cgcccatttatgcgtaatgtatgtgcagttgagatgcgatgggttgcaccaatcttagcg
aagcttgagaaactaaatgtcttcaaactgagtgggggatctagtcagcctgataagcaa
attcaagaagtaactttaaacgtggaaaagaaagaaattgctactattcagtcacctgaa
gaccgtgacagcaggatacaagctgctcgggaaagatttctagctcggaaaggtcagaag
tag
DBGET
integrated database retrieval system
