Nicotiana tomentosiformis: 104110309
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Entry
104110309 CDS
T05025
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE-like
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104110309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nto03009
]
104110309
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
104110309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML
Utp13
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SPT8
WD_LRWD1
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_NWD2_C
Beta-prop_Vps41
WD40_like
Ge1_WD40
PROPPIN
Beta-prop_NUP159_NUP214
Beta-prop_WDR75_2nd
SGL
Beta-prop_RIG_1st
KNTC1_N
Polysacc_lyase-like
Motif
Other DBs
NCBI-GeneID:
104110309
NCBI-ProteinID:
XP_009618067
LinkDB
All DBs
Position
8:64005806..64020660
Genome browser
AA seq
862 aa
AA seq
DB search
MELKKSYKCVKSLEQFYTGGPYVVASDGSFMVCACNDTIKLVELSSSMIKSTIEGDSEPV
TALALNPNTNNILFSASHSRLITVWDLSTLKCLRSWKGHEGPVMGMACDASGGLLATSGS
DGNVRVWDVDGGFCTHQFQGHKGVVTTVMFHPHPDRLQLFSGGDDGLVRVWDLTQKAKKK
CLAKLEKHQSTVTSMAISDDGWTLITAGRDKVVNLFNLHDYGCLTTILTLESVETVCIIG
SESPFAACLASSKHPQAKNRSDVPSINFITVGERGLVRIWSSDRALCLFEQKNSDITISS
DNEYSKRGFISALILPASQELLCVTADQQFFLYYPEESVGSMNLPLRKRFVGYNEEIADM
KFLGDDEQFLAVATSVEQVRVYDLESMSCSYVLSGHTDVILCLDTCVSSSGRTLIVTGSK
DNNVRLWDCENKSCVGVGIGHMGAVGAVAFSKKQRNFFVSGSSDHTLKVWNMDGVSGNNE
EIMTLKAKAVVAAHDKDINSLAIAPNDSLVCSGSQDRTACIWRLPDLVSVVTLKGHKRGI
WSVEFSPVDHCVITASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFLTHGTQFVSCGAG
GLMKLWTVKTNECIATYDQHEDKIWALAIGKKTEMLATGGGDAVINLWHDSTALDKEEAF
RKEEEGVLRGQELKIALIDADYTRAIQIALELRRPHDLLDIFGEINRERDAGDLIGKALE
ALSKEKVYLLWEYVREWNTKTKIYHIAQFVFSQLVKILDTETIKIKGIGEVLEGVIGYTR
RHFKRLDRLERDSFILDFNLASMLVIEPEGNEEKIENKDATLSTAADSEKKSSKKRKLHI
STHVAGKKMKGPSDTSRSVCCR
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaagaagagttacaagtgtgtcaagtctcttgagcaattctacactggaggc
ccttatgttgttgcctcggatggttcgtttatggtatgtgcgtgtaatgacacaattaag
ctggtcgagttatcctcttcgatgataaaatctacaatagaaggcgattctgaaccagtg
acagctcttgctcttaaccctaatactaataatatcctcttttctgctagccatagtcgc
ctaattacagtttgggacctttccaccctcaaatgcctacgctcttggaaggggcatgaa
ggacctgtaatggggatggcttgtgatgcatcaggtggattgctcgcaacatcagggtct
gacgggaatgttcgcgtatgggatgtggatgggggattctgcactcatcagttccaaggt
cataaaggggttgtcaccaccgttatgtttcatcctcacccggaccgcctgcagttgttc
tctggtggtgatgatggtttagtaagggtctgggatctgacacaaaaggcaaaaaagaaa
tgtctggcaaaactagagaaacatcaatcaaccgtcacttccatggcaatatccgatgat
ggatggactttgatcactgcagggagagacaaggttgtgaatttgtttaacttgcatgac
tacggctgcctgaccacaatactaacacttgagtcagttgaaaccgtgtgtataattggt
tcagagtctcctttcgctgcatgcctagcttcatcaaaacatccgcaggcaaagaacaga
agtgatgtaccatcaattaatttcatcacagttggtgagcgtggattggtgcggatatgg
agttctgatagggcactgtgcctctttgagcagaaaaactccgatatcaccataagctct
gacaatgaatattcaaagaggggctttatttctgctttgattttgcctgcaagtcaagag
ttgctctgtgttacagcagaccagcagttttttctctactatccagaggaatctgtaggt
agtatgaatctacctcttaggaagaggtttgttggatacaatgaagagattgcagacatg
aaatttttgggtgatgatgaacagttccttgccgtcgcaacaagtgtagagcaggtacgg
gtatacgatcttgaatcaatgtcgtgctcttatgtattgtctgggcacactgatgttatt
ttgtgtcttgatacctgtgtatcaagttctggaagaacactaatagtaacggggagcaag
gacaacaatgttaggttatgggattgcgagaacaagtcttgtgttggcgtaggcataggt
cacatgggagctgttggtgctgttgctttttcaaagaagcaacgaaacttcttcgtgagt
ggtagtagtgaccatactctcaaggtatggaatatggacggtgtctctggcaacaatgaa
gaaattatgactctgaaagcaaaagcagttgtagcagcacatgacaaggatattaactct
ttggcaatagcaccaaatgacagtcttgtttgcagtggttcccaggatcgcactgcctgc
atatggagacttccagacctagtgtcagtggttacactgaaagggcataaaagggggata
tggtctgtggagttttctccagttgatcattgcgtgataacagcttctggagataagacg
ataaagatatgggccatatctgatggatcatgtcttaaaacatttgaagggcatacatca
agtgtgttaagagcatcgtttcttacccatggaactcagtttgtttcttgtggtgctggt
ggtttgatgaagttgtggacagttaagaccaatgagtgtattgcaacatatgaccaacat
gaggataagatatgggcccttgctattggtaagaaaacagaaatgcttgcaactggcggt
ggtgatgcggtgatcaatctgtggcatgactcaacagctttagataaagaggaagctttt
cgtaaagaagaggaaggcgttctacggggtcaagagttaaaaattgctctaatagatgct
gactacaccagagccatccagatagcattggagcttcgaagaccgcatgaccttctagat
atatttggtgaaatcaacagggagagagatgctggagatctgataggaaaagcacttgag
gctctttctaaagaaaaggtctatttgctttgggaatatgtgagggaatggaacacgaag
acaaagatatatcatattgcacagtttgttttttcccaattggtcaagattcttgatacc
gagactattaagataaagggcattggagaagtgcttgaaggtgttattggttatactcgg
agacatttcaagagactagatagattagaaagggacagtttcattctggactttaattta
gctagtatgttggtcattgagccagaagggaatgaggaaaaaattgagaacaaggatgcc
acactttctactgctgcagatagtgagaaaaaatcatccaaaaagcgaaaattgcatata
tcaacacatgtcgccggtaagaaaatgaaggggccgagtgatacctcacgcagtgtatgt
tgtcgttaa
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