Nicotiana tomentosiformis: 104110414
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Entry
104110414 CDS
T05025
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104110414
03036 Chromosome and associated proteins [BR:
nto03036
]
104110414
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
104110414
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104110414
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
104110414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
ResIII
AAA_19
AAA_22
UvrD-helicase
DEAD
AAA_16
Helicase_RecD
SLFN-g3_helicase
Mov-10_helical
ATPase_2
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
104110414
NCBI-ProteinID:
XP_009618198
LinkDB
All DBs
Position
6:102450326..102456312
Genome browser
AA seq
992 aa
AA seq
DB search
MGSVADKSDDEYSVITDKGDIGFVDFDRYKSACSYNPNGESEIVVISVPFPLIGGKPKSG
IVGETIVDSITIENTTNDSLELWSIKIYDSKPEDSFTLSLMKPPTPCSDVQYIQEFMESF
SLEDRMLRPSQTLTVWLSCKPKEIGLHTSAVHINVGDETIERLVFVLAEDKVSQSLASSR
PYYRDRKKKAPAIDVFAPNAFVVGSRPTRARNQGFRYRLSSYPIPGDIREMIEKKQFPDA
IGEGLRRDNYIFYFRILLNIEEIKMEEDMRDYDMESVTMKRRGPQYLSLDVPGLAERRPS
LVYGDYIFARIATADASETTPYQGYIHRVEAEEVYLKFDKEFHINHVAGNLYNVQFAFNR
TSVRRLHQAIEATESLNGEIFFPSGISRARHIQAARLAPISCMLNKEQTTAVEKILGCKG
GAPYVIHGPPGTGKTRTLIEAILQLHVTRKDARVLVCAPSNSAADHILEKLVSQQNVEVK
DHEIFRLNALTRPLDDVNPSHIRFCNVEVDAFKCPLLRDLRRYRIIISTYASASLLYAEG
IKRGHFSHIFLDEAGQASEPETMVPLSHLLRNETVVVLAGDPLQLGPIVFSKDAENYGLG
TSYMERLFECQLYGDLNENYATRLVRNYRCHPAILQLPSEMFYGGELIACKEDDKASAQT
WVDLLPNKEFPLLFIGIQGCDEREGNNPSWFNRIEASKVVEIIRDLIENKGLKEEDIGVI
TPYRQQVQKIRKALESFDWANVKVGSVEQFQGQEREVIIISTVRSTVTHNDFDRIHYLGF
LSNPRRFNVAATRARSLLVVIGNPHIICKDPYWNKLLWYCADNGSYKGCFLPERLEILEE
DSGRANNWCDDEAQENNWDCKGAQANDWDCEGAQANDWDCEGAQANDWDCEGAQAKSLDC
EGAQAKSLDCEGAQANNWDCEGAEAKSWDCEGAQANNWDYDKAKNCNDGGTCENEGKQSL
QPSPEVQCGTVHQSEYIPDPVMDEAEWSDGWK
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgggctcagttgctgataagtcggatgatgaatattcagtaattactgataaaggagac
atcggattcgttgactttgacagatataaatcagcttgtagctacaatccaaatggagag
agcgagatagttgttatatctgttccatttccactgatagggggaaaacctaaatcagga
attgttggtgaaactattgtcgattcaatcacaatagagaataccactaatgattcgctg
gagctctggtcaattaagatttatgactcgaaacctgaggattcgttcacgttatctctg
atgaaacctccaactccatgttccgacgtgcaatatattcaagaattcatggagtccttt
agcttagaggatagaatgctacgaccaagtcagacactaacagtgtggttgtcttgtaaa
ccgaaagaaattgggttgcacacatcagctgtgcatatcaatgtgggtgatgagaccatc
gaaagattggtttttgtcctggctgaggataaggtctcgcagtcactggcttcgagcagg
ccatactacagagacagaaagaagaaagcaccagcaatagatgtttttgctcctaatgca
ttcgttgtgggttctcggcctacaagggctcgaaatcaaggattcagatacaggctttct
tcatatcccattcctggggatataagggaaatgatagagaagaaacagtttcctgatgct
attggagaaggtttaagaagagataattacattttttattttagaattttactaaatatt
gaagaaatcaagatggaggaagacatgagggactatgatatggagtccgtcaccatgaag
cgaaggggacctcagtatttgtcccttgatgtcccggggctagctgagaggaggccgtca
cttgtttatggggattatatctttgcaaggatagctactgccgatgcaagtgagaccacc
ccttatcagggttatatccaccgagttgaggcggaagaagtgtatttgaagtttgataaa
gaattccacatcaaccatgttgctggaaatctttataatgtgcagtttgcattcaatcgt
acgagtgtgcggaggttacaccaagccattgaagctacagaaagcttaaatggagaaatt
ttctttccatctggcatatccagagcgagacatatacaagctgccagactggcacctatt
tcatgtatgcttaacaaggagcagacgactgcagttgaaaagatccttgggtgcaaaggc
ggagctccgtacgttatccatgggcctcctggtacaggcaaaacaaggactcttatagaa
gctattctccagctacatgttacgaggaaagatgctcgagttcttgtctgcgcaccttcg
aatagtgctgcagaccatatacttgagaaacttgtcagtcagcagaatgttgaagtgaag
gaccatgagatttttaggctgaatgcactcacacgtcctttagacgacgtgaatcctagt
cacattcgcttttgcaatgttgaagttgatgccttcaagtgtcctcttctcagggacctt
agaagatataggattatcatatctacatatgctagtgcatctcttctttatgctgaaggt
attaaacggggacatttctctcacattttcttggatgaggcaggacaggcatcggagcct
gaaaccatggttcctctgtcgcatcttttaaggaacgagacagtagttgtacttgctggt
gatccactgcaacttggtcccatagttttttcaaaagatgctgaaaattatggattgggg
acatcatatatggaaaggttatttgaatgccagttatatggtgatctcaacgaaaattat
gctaccagactagtaagaaactatcggtgtcatccagcaattctgcagcttccctcagaa
atgttttatggaggagagttgatcgcatgtaaagaagatgataaagcttctgctcagact
tgggtggacctgcttccaaacaaggaatttccgttgcttttcatcggtatccaaggttgt
gatgaaagggaaggaaacaacccatcatggttcaataggattgaggcaagcaaggtagta
gagatcataagggatctgatagagaacaaaggtctgaaagaggaagatattggggtgata
acaccttacaggcaacaagtacagaaaataagaaaagcccttgagagtttcgattgggct
aatgtaaaggtcggtagtgttgagcaattccaaggtcaggagagagaagttattattatc
tcgaccgtccgatcaactgtaacacacaatgattttgatagaatccactatttaggattt
ttaagcaatccaagaaggtttaatgttgctgctacaagagccagatcgttgcttgtagtt
attgggaatccacatatcatctgcaaggacccctactggaacaagcttttatggtattgt
gcagataatggctcctataagggctgcttcttacctgaaagactggagatccttgaagag
gattctggacgagcaaataattggtgtgatgacgaggctcaagaaaataactgggactgc
aaaggggcacaagctaacgattgggactgcgaaggggcacaagctaacgattgggactgc
gaaggggcacaagctaacgattgggactgcgaaggagcacaagctaaaagtttggattgc
gaaggggcacaagctaaaagtttggattgcgaaggggcacaagctaacaattgggactgt
gaaggagcagaagctaaaagttgggactgtgaaggggctcaagctaacaattgggattat
gacaaagccaagaattgtaacgacggaggcacctgtgaaaatgaagggaaacagagtctt
cagccatctcctgaggttcaatgtggtacagttcaccagtcagaatacatcccagaccct
gttatggatgaagctgaatggtctgatggttggaaataa
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