Nicotiana tomentosiformis: 104111151
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Entry
104111151 CDS
T05025
Name
(RefSeq) vacuolar sorting protein 39
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04142
Lysosome biogenesis
nto04145
Phagocytosis
nto04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
104111151
04142 Lysosome biogenesis
104111151
04148 Efferocytosis
104111151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nto04131
]
104111151
Membrane trafficking [BR:
nto04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
104111151
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-HC5HC2H
TPR_WDR35
AlaDh_PNT_N
Motif
Other DBs
NCBI-GeneID:
104111151
NCBI-ProteinID:
XP_009619069
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All DBs
Position
2:41847521..41857415
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AA seq
1004 aa
AA seq
DB search
MVHSAYDSFELLNNCPTKIDAIESYGSNLLIACSDGSLRVYGPESAVSDQSPPSDFHSQT
LGLHQERYVLERSVNGFSRRQMLAMEVLVSRELLLSLSESIAFHRLPNLETLAVITKAKG
ANVYSWDDKRGFLCFGRQKRVCIFRHDGGRGFVEVKEFGVPDTVKSMSWCGENICLGIRR
EYMILNTTNGALSEVFPSGRIAPPLVVSLPSGELLLGKDNIGVLVDQNGKLIQEGRVCWS
EAPAAVVIQNPYAIGLLPRHVEIRSLRVPYPLIQTVVLRNVRRVVRSNNAVIVALDYSVF
GFFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRTAKEQSIHIRYAHFLFENGSYE
EAMEHFLASQVEITYVLALYPSIIVPKSSFIPEPQKFVDVADAPYLSRGSSGLSDDLDST
PSIVLESDELDIESKKMSHNTLMGLIKYLQKKRYSVIEKATAEGTEEVVSDAVGDNFISY
GTSRSKKPTKGRTHAPITSVARDMAAILDTALLQALLLTGQSSAATDFLKALNYCDVKIC
QEFLQKRMQYACLLELYRSNSMHREALKLLHQLVEESKSEQIPLELSTKFKPDMIIEYLK
PLCATDPMLVLVFSLPVLESCPMQTIELFLSGNIPADLVNSYLKQHAPNMQATYLELMLA
MNENSISRNLQNEMVQIYLSEVLDLYAELNTQQKWDEKTYSPTRKKLLSALESISGYNPE
VLLKRLPPDALYEERAVLLGKMNQHELALSIYVHKLHVPELALSYCDRVYDSGLQQHSAK
SYGNIYLTLLQIYLNPTKTTKNFEKKITNLVSSQSPGIPKVGSGTTAKIKGGRSKKIAEI
EGAEDIRFSPSGTDSGRSDGDMEDAAEEGDSTIMLDQVLDLLSRRWDRIHGAQALKLLPR
DTKLQNLLPFLGPLLRKSSEAYRNFSVIKSLRESENLQVKDELYNQRKAVLKITSDSLCS
LCNKKIGTSVFAVYPNGKTIVHFVCFRDSQNMKAVGRGSQMRKR
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacagtgcctacgattccttcgaactcctcaataattgtcccacaaaaatcgat
gccatcgaatcatacggctcaaatttactcatcgcctgttccgatggatcgctccgcgtt
tacggtccggaatccgctgtttccgatcaatctccgccgtccgatttccactcccaaacc
ttagggcttcatcaagagcgatacgtgcttgaaagaagtgtgaatggattctccagaaga
caaatgctggctatggaagttctcgtatcgcgagaacttctgctttctctctcggagtcc
atagcgttccatcggttgcccaatttggagactttggctgtgataactaaggctaaaggt
gcaaatgtatactcatgggatgataaaagagggtttctttgcttcggcaggcaaaagaga
gtttgtattttcagacatgacgggggaaggggatttgtggaggtgaaagaattcggggtc
cctgacacagtcaagtcgatgtcatggtgtggtgagaatatttgcttggggattagaaga
gagtacatgatattgaataccaccaatggtgcattgtctgaggtgtttccttcagggagg
atcgccccacctcttgtggtgtctcttccctccggagaacttcttttgggaaaggataat
attggtgtcttagttgaccaaaatggcaagttgattcaagaggggagggtttgttggtcc
gaggctcctgcagctgttgttattcagaatccctatgcaataggtctcttaccacggcat
gttgagatacgttctcttcgtgttccttatcctttaattcaaacagttgtccttcggaat
gttcgccgtgttgttcgaagcaacaatgctgttattgttgctcttgattattctgttttt
ggcttttttcctgttcctctgggtgcacagattgtgcaactaacagcatctggaaacttt
gaggaagccttggctttgtgcaaattgctaccaccagaagattcaagtcttagaactgca
aaggagcaatcaattcatataagatatgcgcactttctatttgaaaatgggagctatgaa
gaagcaatggaacattttctggcatctcaagttgaaatcacttatgtgctcgccttatat
ccatcaattattgttccgaaatcatctttcatacctgaaccacagaaatttgttgatgtc
gcggatgcaccatatctctcccgaggttcctctggtctatcagatgatctggactcgacg
ccttcgattgtcttagaatctgatgaattggatatagaatccaagaaaatgagtcataac
actttgatgggtctgattaagtatttgcagaagaagagatatagtgtcattgagaaagcc
acagctgagggaactgaggaggtggtttcagatgctgtaggagataatttcatttcctat
ggaactagccggtccaaaaaaccaaccaagggaagaacccatgctccaatcacttccgtc
gctagggatatggctgctattctggacactgcacttcttcaagctctacttttaactgga
cagtcctcagctgctacagattttctgaaagccctcaactattgtgatgtgaaaatatgc
caggagttcctgcagaaaagaatgcagtatgcttgtctgctagaactttatagaagcaac
tcaatgcatcgtgaagcactgaaacttctccatcaattggtagaagagtcgaagtcagag
caaattcctttagagctttcaacgaaattcaagcctgatatgatcattgaatatctcaaa
cccctttgtgcaacagaccccatgcttgtcctggtgttctcactgcctgttcttgaaagc
tgtcctatgcaaaccattgagctattcttgtctggtaacattccagcagacttggtgaac
tcttacttaaaacagcatgctccaaacatgcaggcgacatatctggaactcatgcttgcc
atgaatgaaaatagcatctccaggaatctgcagaatgaaatggtgcaaatttatctctcg
gaagtgcttgatttgtatgctgaacttaacacccagcaaaagtgggatgagaaaacatat
tctccgacaaggaaaaagctattgtctgctttggagagtatctctggatataacccagag
gtgctgctgaagagacttccaccagatgctttgtatgaagaacgagcagttctgttgggg
aaaatgaatcaacatgaacttgcgttgtctatttatgtgcacaagcttcacgttcctgaa
cttgcactgtcctattgtgatcgggtgtatgattcaggacttcaacaacattcagcaaaa
tcatatggaaacatttacctgactctactgcaaatctatctaaatcctacgaagacaacg
aaaaattttgagaagaaaattactaatctggtatcatctcagagccctgggattccaaaa
gttggttcaggaactacagcaaagataaaaggaggccgctccaagaaaattgctgaaatt
gagggcgctgaggacattcgattcagtccaagtggcactgacagtggtaggagtgatgga
gatatggaagatgctgctgaagaaggagattctactattatgctagatcaagttcttgat
cttttgagcagaaggtgggatcggatccatggggcccaagctctgaaactactgccaagg
gatacgaagctacagaatttgcttccatttcttggacctcttctgaggaaatccagtgaa
gcgtatcggaacttttctgtgataaaaagcttgagagaaagtgaaaacctacaggtcaaa
gatgaactgtataaccaaagaaaggcagtcttgaagatcacaagtgatagcttgtgttct
ctctgcaacaagaagatcggcaccagtgtctttgcagtctatcctaatggcaagacaatt
gtgcactttgtttgctttagagattcacagaatatgaaggcagttggaagaggctctcag
atgaggaaaagatga
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