Nicotiana tomentosiformis: 104111183
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Entry
104111183 CDS
T05025
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104111183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nto03400
]
104111183
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
104111183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
104111183
NCBI-ProteinID:
XP_009619118
LinkDB
All DBs
Position
8:115636555..115647409
Genome browser
AA seq
1273 aa
AA seq
DB search
MNKGTKTFLKSPFQYICISLLLYLSLSFLTVSLPLQNQKTPPTHPPLYLRLSHAKVSSRK
SLFSVLFLYLSFYISVYIQSLFYCISPSSFTLFQELKKLLVLDFFIIQKFTLYPVFWKMD
SRAASFPRRRTRQQWDKYFVEVIEKKRLSQSGNPPQSSSTCSVNIGDDVTASGDMRESSS
ATGKLTKENTSCGVDNRKIGKWSEGESMVRSLDKGKKRMDNGNRKLSPGTCESMTKQIFV
QEISDDDVDEEEEEEDSDPVVVITGESAAASALNTGSGSGSWSNCVGLRSPIVATADEVV
SSTSSMCRTRGPSELHKSEEPTDFEESEDDCVKSQESSDDTTESSESESEASSDEDNDDP
EDKDYRVNEPSSSSESDDNIDDVSCHIELQDNEEGKGSNIRIGLDDDIDGRKESEDDDPV
EQQENGEGKGESNEGLIPQLVVEGEKHRGRAYLLRPRSLSKSKKRKLNHGNCSSPILLSD
DEESESPFEEGTDADDSTRDAAQKDKVDDLVKKVAEKEKADDSVKNAAQKDRKTRKKCIL
KDLDFVKFVVDSIINVDDHDKLASPEGKEQFPVKETLPLIFRFEDEDPLLQEKEEWEKEI
DNLFAEMDMGILESCIGFTNPSLGEKVSGCQMGSHHLILDEQIGLICKVCSHVHLESKYI
YPAFAERTRGRHERTYFGESSPFFDVDGFRFDDPSAVHDSAIYVEGTVWDLVPLHAKATM
YPHQREGFEFMWKNIAGDIYLEKLSEPLSASRGGCIISHPPGTGKTRLTIVFLQAFLKQF
PKCRPVIIAPPKLLSNWEVEFQKWEADIPFHNLNNNDFSCQEDEVTVGLYHCLSRAGRKN
KHHIRMVKLKSWAKSKSVLGISYDLFEKLTGEYGDGYAKEIREILLTLPGLVVLEEGHTP
RNEQSLLYKAMTKVETQRRILLSGTVFQNNFKELYNTLRVVSPKFAAESEQKWASLSNSI
DTNSRALEELRDMIAPLIHICSENVKMKSLPGIRDTLVYLKPTDLQKKLLNMIPEYPGSF
DFRNMVSLISVHPSLVANKKVFSDLESQLNERECRLDPNTGVKTKFVVELIRLCDGMRER
VIVFSQLLDPLRLIKEQLNSLFHWTLGREILYMDGELDVKQRQKSISSLNDPKSDAKVLL
ASITACSEGINLIGASRVVLLDVHWNPSVEQQAVSRAYRNGQTKFVHVYCPVASKWEVNK
IEQQTRKKYHSGVLLSRNEVNTCKTNPSCSVLEDNILESMVQNESLRHIFEELPYEPRAY
GFSSCNQPSKASI
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaggaaccaaaacattccttaaaagcccgtttcagtatatatgtatctctctg
cttttatacctttccctctcttttctgactgtttctcttcctctacaaaaccaaaaaaca
ccacccacccacccgcctctctatctccgcctgtctcacgcaaaagtttcttcccgaaaa
agtctcttttctgttctctttctctatctctcgttctatattagtgtatacattcaaagt
ctattttattgtattagtccctcaagttttactctgtttcaagaactcaaaaagctcttg
gttcttgatttcttcattatacaaaagttcactctttatccagtattctggaagatggat
tcaagggcagcctcttttccaaggaggaggactagacaacaatgggataaatatttcgtc
gaggtaattgagaagaagaggttgagtcaaagtggtaatcctcctcagtcttctagtact
tgttctgtgaatattggagatgatgttacagcttctggtgatatgagggaatcatctagt
gcaacaggaaaactgactaaagaaaacacaagttgtggagttgacaacagaaaaattgga
aaatggtcagaaggtgaaagtatggtaagaagtttggacaaaggtaaaaaaaggatggac
aatgggaatagaaagctcagtccaggaacttgtgagtccatgacgaaacagattttcgtc
caggaaatatctgatgatgatgttgatgaggaggaggaggaggaggacagtgatcctgtt
gttgttatcactggggagtctgctgcggcgtctgctttaaatactggatcaggttcagga
tcttggtccaattgtgttgggttaaggagtcctattgtcgctacagcagatgaggttgtt
tcatctacctcaagtatgtgtaggacacggggccctagtgagttgcataaatcagaggag
ccaactgattttgaggaatcagaggacgattgtgtaaaatcacaagagtctagtgatgat
acaacagaatcttctgagtcagagtctgaagcttctagcgatgaggataatgatgacccc
gaagataaggattatcgggtgaatgagccatcaagttctagcgaatcagatgacaacatt
gatgatgtgagttgtcatatagagcttcaagacaatgaagaaggaaaaggatctaatata
agaattggtttggatgatgacattgatggaagaaaggaatcagaagatgatgatcctgta
gagcaacaagaaaatggagaaggaaaaggggagtcaaatgaggggctaatacctcagctt
gttgttgagggtgaaaagcacaggggccgagcatatcttcttcgtccacgctcactttct
aagtcaaaaaagaggaagttaaaccatggaaattgtagtagccccattcttctcagtgat
gacgaggagtctgaatccccatttgaagagggcacagacgctgatgactcgacacgagat
gctgctcaaaaggacaaggttgatgacttggtgaaaaaggttgctgaaaaggaaaaggct
gatgactctgtgaaaaatgctgctcaaaaggacagaaagactcggaagaagtgtattctt
aaggatctcgactttgtgaagtttgttgttgattctattataaatgttgatgatcatgat
aaacttgcttctcctgaagggaaggaacagtttcctgtcaaagaaacacttccgttgatc
ttccggtttgaagacgaggatcctctcctccaggagaaagaagaatgggaaaaagaaatc
gacaatttatttgctgaaatggacatgggtatcttagaatcatgcattggcttcacaaat
ccatctttgggtgagaaagttagcggctgtcagatggggagccaccatcttattttagat
gaacaaattggactcatctgtaaagtttgttcacatgtgcatctggagagcaagtacatc
taccctgcttttgctgagagaacccgcgggaggcatgaaagaacgtatttcggagagtcg
tcaccattcttcgatgttgacgggtttagatttgatgatccttctgcagtccatgattct
gctatttatgtggaaggaactgtgtgggatttagttcctctgcatgccaaagcaacaatg
tatcctcatcaacgtgaaggatttgagttcatgtggaaaaatattgctggagatatatac
cttgagaagctgagcgagcctttatctgctagtaggggaggatgcataatctcacatcca
cctggaaccggaaaaacccgtctgaccatagtatttcttcaggcatttctgaagcagttt
ccaaagtgtcggcctgtaatcatagctccgcccaagttgctgtctaactgggaagtcgag
ttccagaaatgggaggcggacattcccttccacaacttgaacaacaatgatttctcgtgc
caagaagatgaagtcacggttggtctctaccactgtttatcacgtgccggaagaaaaaac
aaacaccatatacgtatggtgaagctgaaatcctgggctaaaagtaagagtgtattgggg
atcagctatgacttgttcgagaagctcacgggagaatatggagatggttatgccaaagag
attagagaaatacttctaacattacctggtcttgtagtccttgaagaagggcatactcct
cggaatgagcaaagccttctgtataaagctatgactaaggttgaaacgcagaggcgcata
cttttgtctggaactgtcttccagaataactttaaagagttgtacaacaccctccgcgta
gttagtccaaagtttgctgcagaatctgagcagaaatgggcttctcttagcaattctatt
gacacgaattcccgagcattggaagagcttagggatatgattgcaccactaatccatata
tgtagtgaaaatgtgaagatgaaaagccttccgggtataagggacacactggtatacttg
aagcccacagatctgcagaagaagttgctcaatatgattccagagtatccaggctcattt
gactttcgaaatatggtgtctctgatctctgttcatccttcattagtggcaaataagaag
gtgttctctgacttagaaagtcagctaaatgaaagagaatgtcggttggatccaaatact
ggagtgaaaacaaaatttgtcgttgaactaatccgactctgtgatggcatgagagagagg
gttatagtattcagccagttacttgatcctctaagactgatcaaggagcaactcaattct
ctctttcactggactttaggccgagagattctatatatggatggggaacttgacgtaaag
cagcgccagaaatcaataagttctcttaatgatcctaagagtgatgcgaaagtgctgctc
gcatcaataacggcctgttcggaaggaataaatcttataggggcctcacgagtagttttg
cttgatgttcactggaatccctcggtcgaacagcaagccgtcagtcgagcctacaggaat
ggtcagactaaatttgtgcatgtttactgtccagtggcatcgaaatgggaggttaacaag
atcgaacagcagacgaggaaaaaatatcattctggtgtacttttgtctaggaatgaagtg
aatacttgcaagacaaatccttcttgttctgtgcttgaggacaacatactagaatccatg
gttcagaatgagagtctccgtcatatttttgaagagctaccttatgaaccccgtgcctat
ggctttagttcttgtaaccaaccttcaaaagcgagcatttag
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