Nicotiana tomentosiformis: 104111275
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Entry
104111275 CDS
T05025
Name
(RefSeq) protein CHROMATIN REMODELING 35 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104111275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nto03400
]
104111275
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
104111275
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
104111275
NCBI-ProteinID:
XP_009619238
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Position
1:76630629..76641743
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AA seq
925 aa
AA seq
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MTMDLATEGWRSSFVNPTAKRLQPCSPRDLFSKGTKKMKFDESRSQSSPTTASSWREECE
HEKGKVSSGVFGRSDPFAIPELLEALDSGKFGSVTREIEDLIKRRMKLVNSCFASDHSLP
NKVLELERNFEKGEFKGNQPAPDVIDLEDEQEAKGVAPSTCFGPSAGLLVIIDSDDEDTQ
KDFISPSQGMIHTQKSSISPFQGIPLQNAFIDFQVKDFVGKDSAERQTLIETLSLGGEAE
ITKDKGVYVGVQDDDEIDDGAEQPDEGLTDIWNEMSFALESSKDVAAEPSLNEHTVEEED
ECDHSFILKDDIGYVCRICGVIQRSIDTIIEFQYSKASKSIRTYHYEGRSAKDIGHAELL
PEGIISSDDIDTTEICVHPRHKKLMKAHQVEGFNFLVSNLLKDKGGCIMAHAPGSGKTFM
IISFLQSFMANNDRARPLVVLPRGILATWKKEFLRWQVDEISLYDFYSVKADNRSQQLEV
LKQWSQERSILFLGYKQFSTIVCDNVGSTTAAACQEILLKCPSILILDEGHTPRNQDTDV
LTSLEKVQTRLKVVLSGTLYQNHVKEVFNILNLVRPKFLKLEDSRNIKRTILSKVASSGR
KNLLKKSNDNDFYELVEHTLLKDDNFSRKSSVILGLRDMTKKVLHYYKGDFLEELPGLVD
YTVLLNLHPKQKNEVAELKKLGRKFKISSEGSAMYVHPQLKTLSRNYSVKERVDEEKIDM
LLENLEVREGVKAKFYLNLLQLCESKGEKLLVFSQYLLPLKFLERLTIRTKGYSLGKEIF
LITGDSDSETRESSMERFNTSADARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQ
AIGRAFRPGQVRKVYTYRLIASGSPEEEDHQTCFKKESIAKLWFEWSEYYAQPDFEMETV
NIENCDDMFLESPRLNEDVVALYKR
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgacaatggacttagctactgaaggatggcggagcagttttgttaaccctacggctaaa
aggttacagccctgtagcccccgagatttattttctaaggggacaaaaaagatgaaattt
gatgaaagtagaagccagagtagccctactactgcatctagttggcgggaagaatgcgaa
catgaaaaaggaaaggtgtcatcaggagtttttggccgttctgatccgtttgctattcct
gaattgcttgaagcgttagattctgggaagtttggaagtgtcaccagagagattgaggac
cttattaagcggcgaatgaagttagtgaactcttgttttgcaagtgatcattcacttccc
aacaaagtcttggaattggaaaggaactttgagaaaggggagttcaaaggaaatcagcct
gcccccgatgtaattgacttggaggatgagcaggaagctaaaggcgttgctccctctaca
tgttttggaccttcagctgggcttcttgttattattgattcagatgatgaagacactcaa
aaagacttcatctctccatctcaggggatgattcacactcagaagagttctatttctcca
tttcaggggatccccttacagaatgcttttattgactttcaagttaaggattttgtgggg
aaggattctgctgaaagacagactttgatagaaactttaagcctcggtggggaagctgaa
ataacgaaagataaaggtgtttatgttggtgtacaagatgatgatgagattgatgatggc
gccgagcagcccgatgaaggtttgactgatatatggaatgagatgtcatttgctctcgaa
agctcaaaggatgttgctgctgaaccttcactcaatgagcatacagttgaagaggaagac
gagtgcgatcattccttcatcttgaaagatgatattggttatgtgtgtcgtatatgtgga
gtcattcagagaagcatcgataccatcattgaattccagtattcaaaggcctccaagagt
ataagaacgtatcactatgaaggtcggtcagcgaaggatatagggcatgctgaactcctt
cctgagggcatcatttcatctgatgacattgatacgactgaaatttgtgttcatccaaga
cacaagaaactgatgaaagctcaccaagttgagggatttaattttcttgttagcaacttg
ttgaaagataaaggaggctgtatcatggctcacgcccctggatctggcaagactttcatg
ataatcagcttcctacagagttttatggccaataatgatagagctaggcctttggtggtg
ttacctagaggaatcttggctacatggaagaaagagttcttgaggtggcaggtagatgaa
atttccctctatgacttctactcagtaaaagcagataatagatctcaacaattggaagtt
ctgaagcaatggtcacaggaaagaagtattctttttctaggctataagcagttctcaaca
atcgtgtgcgacaatgttggtagtacgactgcagctgcttgtcaggagattctgttgaag
tgcccatcaattctcattcttgatgaagggcacactccgcggaaccaagacactgatgtt
ttgacttcactcgagaaggtccagacacgactaaaggtggtgctttctggcaccctctac
caaaaccatgttaaagaggtctttaacattctgaaccttgtgcggccaaaatttctcaag
ttggaagattccagaaacatcaaaaggacaatactgagcaaagtagccagctcaggcaga
aagaacctcttgaagaaaagtaatgataatgatttttatgagttagtagagcatacattg
ttaaaggatgataatttctcaaggaagagttctgtcatactaggtctgcgggatatgacc
aagaaagtgcttcactattacaagggagacttcctcgaagaacttccaggattggtggat
tacactgtccttctaaacctccatcctaagcagaaaaatgaagttgcagagctgaagaaa
ctgggaagaaagttcaaaatcagttctgaaggaagtgcaatgtatgtgcacccacaattg
aagaccctttcaagaaactattctgttaaagaaagagttgatgaagagaaaattgatatg
ctcttagagaatttggaagtgagggaaggagtgaaagccaaattctaccttaacctgctg
cagctatgtgaatcaaaaggtgaaaaactgctagtgtttagccagtacctcttgcctttg
aaattcttggagaggttgactattaggactaagggttacagtctggggaaggaaatattt
ctgatcactggtgattcagactcggaaaccagggagtcatcaatggaacggtttaacact
tcagcagatgctcgtgttttctttggttcaattaaggcatgtggtgaaggaatatcactt
gttggggcatctcggattatcatattggatgtacatctcaacccgtcagtaacccgtcaa
gcaatagggcgtgcattccgaccaggtcaggtcaggaaagtatacacttacagattgata
gcctcaggttcacctgaggaggaagatcatcaaacttgttttaaaaaggagtctattgca
aagttgtggttcgagtggagtgagtattatgcccagcctgattttgagatggagactgtc
aatattgaaaactgtgatgatatgtttttggaatcaccgcgtcttaatgaagatgtggtg
gctctgtacaaaaggtag
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