Nicotiana tomentosiformis: 104111989
Help
Entry
104111989 CDS
T05025
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104111989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104111989
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
104111989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Ring_hydroxyl_A
Motif
Other DBs
NCBI-GeneID:
104111989
NCBI-ProteinID:
XP_009620114
LinkDB
All DBs
Position
8:complement(89030452..89037062)
Genome browser
AA seq
243 aa
AA seq
DB search
METDRKDGRTANQLRPLACTRNVLNRAHGSASWSQGETKVLAAVYGPKAGTKKNENPEKA
CFEVIWKPKTGQSGKAEKEYEMILKRTVQSICVLNVHPNTTTSIIIQVVNDDGALLPCAI
NAVCAALVDAGIPLKHLAVAICCSLSESGHILLDPSKLEEQKMKAFVYLVFPNSTLSVLP
DESLKVRGEPTEHGLITSFTHGVMSVDDYIRCLERGRAATAKLSDFLRRSLQSQVQSESS
KLG
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagataggaaggatgggcgaacagcgaaccaattgaggccgttggcttgcact
cgtaacgttcttaatcgggctcatggctctgctagttggtctcaaggggagacaaaagtt
cttgccgctgtttatggaccaaaggctggaacaaagaagaacgagaacccggaaaaagcc
tgctttgaagtaatttggaagccaaaaacggggcagagtggtaaagcggagaaggagtat
gagatgattttgaagaggactgtgcaaagcatttgcgttttgaatgttcatccaaatacc
accacgtcaattatcattcaggttgtcaacgatgatggagctcttcttccatgtgccata
aatgcagtatgtgctgcccttgtggatgctgggattcctttgaagcaccttgctgttgca
atatgttgtagtctatcagagagtggacatattctactggaccctagcaagctagaagag
cagaaaatgaaggcgtttgtatatctagtttttcctaactcgacattatctgtgcttcct
gatgaatcattgaaagtgagaggtgaacccacggaacatggacttataacatcttttaca
cacggtgtaatgtcagttgatgactacattcgctgtttggagcgaggacgtgctgccact
gcaaagttgtccgattttctccggagaagcttgcaatcacaagtccaaagtgagtcatcc
aagttgggttaa
DBGET
integrated database retrieval system
