Nicotiana tomentosiformis: 104112021
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Entry
104112021 CDS
T05025
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104112021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nto04131
]
104112021
Membrane trafficking [BR:
nto04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
104112021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_HPS5
zf_RING_Vps8
WD40_Prp19
WDR55
Beta-prop_EML_2
zf-RING_2
zf_RING_Vps8_fungal
WDR90_beta-prop_4th
EIF3I
PROPPIN
PEP5_VPS11_N
zf-HC5HC2H
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
104112021
NCBI-ProteinID:
XP_009620139
LinkDB
All DBs
Position
11:complement(105942990..105958064)
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AA seq
958 aa
AA seq
DB search
MSRKLSDNGIDGDDERDQEEEEDSVEEVEEEEEYEPRLKYQRMGGSVQSLLSSDAATCIA
VAERMIALGTYGGAVHILDFLGNQVKEFAAHTAAVNDLCFDAEGEYIGSCSDDGSVIINS
LFTNERMKFEYHRPMKAVALDPDYARKSSRRFVTGGLAGNLYLNAKKWMGYRDQVLHSGE
GPIHAVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLVPRIVWQDDTLLV
IGWGTSVKIASIRTNQNKGVNGTYKYITMSRLNQVDIVASFQTSYFISGIAPFGDSLVIL
AYIPAEDGEKDFSSTIPSRQGNAQRPEVRVVTWNNDELATDALPVHGFEHYKAKDYSLAH
APFSGSSYAGGQWAAGDEPLYYIVSPKDVIIAKPRDTEDHINWLLQHGWHERALLAVEAN
QGRSELHEEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVP
YIPTENPRLRDTAYEVALVALATNPAFHKDLLSTVKSWPPSIYSTSPVISAIESQFNTSS
MTDHIKEALAELYVIDGQHEKAFAIYADLMKPDLFDFIEKHNLHDAVREKVVQLMMVDSK
RAIPLLIQHRDLIHPPEVVSQLMAARNKCDHRYLLHLYLHSLFEVNPHAGREYHDMQVEL
YADCDPKMMLPFLRSSQHYTLEKAYDICVKRDLLKEQVFILGRMGNAKQALAVIINRLGD
IEEAIEFVSMQHDDELWEELIKQSLNKPEMVGVLLEHTVGNLDPLYIVNLLPNGLEIPRL
RDRLVKIVTDYRTETSLRHGCNDILKADCVNLLVKYYKEAKRAICLSDDVDQARSRKSEQ
KASHLGERVMSMKSMEVKSKTRGGGRCCICFDPFSLQNVSIIAFFCCHAYHTTCLMESTI
SVGGKKESGAASKGTGSYYESDNGIDDEEEEYDDDDDDGDASSGASRMRCILCTTAGG
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgtcacggaagctatcggataacggaatcgacggcgacgacgagagggatcaagaagaa
gaagaagattccgtagaagaggtggaagaagaagaagaatatgaaccgagacttaagtat
cagaggatgggaggcagtgtgcaatcgcttctctcaagcgatgctgccacgtgtattgcc
gtcgccgaacgaatgattgcccttggtacttacggtggagccgttcacattctagatttc
cttggcaatcaggttaaagagtttgctgctcatactgctgcagtcaacgatctttgcttt
gacgcagaaggtgaatacattggaagctgttctgatgatggatctgtcataataaatagt
cttttcactaatgagaggatgaaatttgagtatcatcggccaatgaaggccgttgcttta
gacccagattacgcaagaaaatcttccagaagatttgtgactggtggtttagctggtaat
ttgtatcttaatgctaaaaagtggatgggctatcgagaccaggttctgcactctggtgaa
ggtccaattcatgcagtgaagtggcggactagtctcattgcctgggcgaatgatgcagga
gttaaagtttatgatgctgcgaatgatcagcgcataactttcattgaaagacctcgtgga
agtcctcgccctgaacttctggtccctcgtatagtttggcaggatgacactcttttggtc
attggatggggaacctctgtgaaaattgcatcgataagaacaaaccaaaacaaaggcgtg
aatgggacatacaagtatataaccatgtctagactgaatcaggtggacattgtggcatcc
tttcaaaccagctatttcatttcaggaattgctccttttggtgattctttggttattcta
gcttatattcctgccgaagatggagagaaggacttcagcagcactattccctcaagacag
ggaaatgctcaaagaccagaagtgcgtgtcgtgacgtggaataatgatgagcttgctacc
gatgctctcccggtacatggctttgagcattacaaggcgaaagactattcacttgcacat
gctccattttcaggcagcagctatgcagggggtcagtgggctgctggtgatgaaccctta
tactacattgtatccccaaaagatgtgattattgcgaagccaagggacacagaagatcat
attaattggcttctccagcatggatggcatgagagagctttattagcagttgaggccaat
cagggaaggagtgagctccatgaagaggtgggttcaagataccttgatcatctgattgtg
gaaaggaagtatggcgaagcggcatcattatgtccaaaactgttgcgaggatcagcttct
gcgtgggaaagatgggtttttcattttgcacatctgcgacaactccccgtgttggttcca
tacatcccaacagaaaatccaagattgcgtgatacagcttatgaggtagctcttgttgct
ctggcaacaaatccagctttccacaaggatctcttatcaactgtcaaatcctggccacct
agcatttattctacatcacctgttatctcagctatagaatctcagtttaatacctcatct
atgactgatcacatcaaagaggcattagcagaattatatgtgattgatggacaacatgaa
aaagcttttgctatttatgcggatcttatgaagccggatctgttcgacttcattgaaaag
cataatttgcatgatgctgtgcgtgaaaaggttgtccaacttatgatggttgacagcaag
cgtgccatacctttgttgatccagcatagggacctaatacatccacccgaagtggtgtca
caacttatggctgcaaggaataagtgtgaccatcgctaccttttgcatctgtaccttcat
tcactatttgaggtgaatcctcatgctggacgggagtaccatgacatgcaggttgagctt
tatgctgactgtgatccaaagatgatgcttccctttctcagaagtagccagcattataca
cttgagaaggcttatgatatctgcgtgaagagagatttattaaaggagcaagttttcatc
cttggaagaatggggaatgcaaagcaggcccttgcagttattataaatagattaggagat
atagaagaggccatagaatttgtaagcatgcaacatgatgatgaactctgggaagagctg
attaagcaaagtcttaataagcctgaaatggttggagtattattagagcatactgtaggg
aatcttgatcccctttacattgtaaatttgttgcccaatggcttggaaatacctcgtctg
agggatcgtctagtaaaaattgtcactgactacagaacagaaacttctcttagacatgga
tgtaatgacatacttaaggctgattgtgtcaacctgctagtcaaatactacaaggaagca
aagcgcgcgatatgtttgagcgatgatgttgatcaagcacgttcccgtaagagtgagcag
aaggcttcacatttaggagagagagtcatgagtatgaaatccatggaggtcaaatcaaaa
accagagggggtggaaggtgttgcatatgttttgatccgttttctctacagaatgtatca
attattgccttcttttgttgtcatgcctaccatacaacttgtcttatggaatccaccatt
tctgttggcggtaaaaaagagtctggggctgcttccaaggggactgggtcatattatgaa
tctgataatggtattgatgatgaagaagaagaatatgatgatgatgacgatgatggggat
gcttcttcaggtgcctctcggatgcgttgtattttgtgtactacggcgggaggttga
DBGET
integrated database retrieval system
