Nicotiana tomentosiformis: 104112238
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Entry
104112238 CDS
T05025
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1 isoform X1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104112238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104112238
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
104112238
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GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
104112238
NCBI-ProteinID:
XP_070037318
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Position
7:complement(1242644..1260694)
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AA seq
219 aa
AA seq
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MGDHSFLTAEENGGVYSSGGAVNSSNVLNIYPLNHYYFGSKEAVQFKEETLADRVLRMKL
NYDTYGLRTCVQAVLLVELFKHPHVLLLQVRNSMFKLPGGRVRPGESEIECLRRKLSSKL
SMSEDDSWEVGECLGMWWRPDFETLFYPFMPPDTKRSKECTKLFLVRLPESRKFIVPKNL
KLLAVPLCQVHENFKTYGPIIAGVPQLLSKFSYNMMDYV
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatcatagtttcttaacggctgaggaaaacggcggtgtttattcaagtggtggt
gctgttaatagtagtaacgtattgaacatttacccactgaatcattactattttggttca
aaagaggctgttcagtttaaggaagagactttagctgatcgcgttctacgcatgaaattg
aactacgatacttatggactcaggacctgtgtacaagctgtgcttttggtcgagttgttc
aaacatccacatgtactattattgcaagtacgaaattccatgttcaagcttccaggtggt
cgtgttaggcctggtgaatcagaaattgaatgtctaagacgtaagctctcaagtaagcta
tccatgagcgaagatgacagctgggaggtaggtgaatgccttgggatgtggtggagacct
gactttgaaacattgttttacccgtttatgccacctgatacaaaaaggtctaaggagtgc
acaaaactgtttcttgtgaggttgcccgaaagtcgcaaattcattgtaccgaagaacctt
aagcttctagctgttccactctgccaagttcatgaaaatttcaagacctatggaccaata
attgccggagttccacaactgctgtcaaagttctcctacaacatgatggattatgtctga
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