Nicotiana tomentosiformis: 104113966
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Entry
104113966 CDS
T05025
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104113966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104113966
03041 Spliceosome [BR:
nto03041
]
104113966
03036 Chromosome and associated proteins [BR:
nto03036
]
104113966
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
104113966
Spliceosome [BR:
nto03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104113966
Complex B
104113966
Complex C
U2 SnRNP specific factors
104113966
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
104113966
TFTC complex
104113966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
104113966
NCBI-ProteinID:
XP_009622589
LinkDB
All DBs
Position
4:12538643..12545049
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQKPTGILCAINGSFSGGKVQEIAVARGKVLDLIRPDDNGKLQTLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
GIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITFSICGVDCGFDNPI
FAAIELDYAEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDRVKELKIKYFDTIPVSSSLCVLKSGFLFTASEFGNHALYQFQAI
GDDPDIEASSSTLMETEEGFQPVFFQPRKLKNLVRIDQIESLMPIMDMKIVNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASIGGEDGADHPASLFL
NAGLQNGVLFRTVVDMITGQLSDARSRFLGLRAPKLFSIVVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKRKMVIMIESDQGAYTAEEREAAKKECFETAGNGENGNAEQVENGEDDDGNDP
LSDEQYGYPKSESGRWVSCIRVLDPRSTQTTCLLELQDNEAAFSICTVNFHDKEHGALLA
VGTAKGLQFWPKKSFEAAYIHIYKFKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGVGS
VLRLYDLGKKRLLRKCENKLFPNSITSIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTVAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVSCLQRASLIPGGGECVIYGTVMGSVGAMLPFTSRDDVDFFSHLE
MHLRQEFPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactctccaaaaacccaccggcatactctgcgccatcaacggc
agcttttccggtggcaaagtacaagaaatcgccgtcgcccggggcaaagtccttgacctc
atccgccccgacgataacggtaagctccaaaccttattatccgtcgaaatcttcggcgct
atacgctccttagctcaatttcggttaaccggtgcacaaaaagattatatcgtagtcggg
tcggattcgggtcgtatagtgatactagagtataataaagagaagaatgttttcgataaa
attcatcaggagacttttggtaagtcgggttgtagacggatagttccgggtcagtatttg
ggtattgacccgaaaggtagggctgttatgattggtgcttgtgagaaacagaagcttgtg
tatgttttgaatagggatactgctgctaggttaactatttcgtcgcctttagaagctcat
aagagccacacgattacgttctcgatttgtggtgttgattgtggatttgataacccgata
tttgctgcgatcgagttggattacgcagaggcggatcaggatcctactggccaggctgca
aatgaggctcagaagcatttgacattttatgaattagatttagggcttaatcacgtttcc
aggaagtggagtgaacaggtcgataatggtgctaatttgctcgtgactgttcctggtggt
ggggatggtccgagtggtgtgcttgtttgcgcggagaatttcgtgatatataagaatcag
ggacaccctgatgttagggctgttattcccaggagggtggatttgccagcggaacgtggg
gttttgattgtttcagctgctatgcataagcagaagtcgatgttcttctttcttttgcaa
actgaatatggagatatctttaaggtgacattggatcacgacaatgacagggttaaggag
ttaaagatcaagtattttgatacaattccagtcagttcttcgctgtgtgtcttgaagtca
gggttcctgtttactgcgtcagagtttgggaatcatgcattgtatcagtttcaggcgata
ggagatgatcctgatatcgaagcttcatcatcaacgttaatggaaactgaagaaggattt
cagcctgtatttttccagccaagaaagctaaagaatcttgttaggatcgatcagattgag
agcttgatgccaatcatggacatgaaaatagtaaatctttttgaggaagaaactccacaa
atattttcactgtgtgggaggggtcctcggtcctcgttgcgcatacttaggccaggttta
gctgttagtgaaatggctgtgtcacagcttcctggtgttcctagtgctgtctggactgtg
aaaaagaatgtcaatgatgagtttgatgcgtacattgttgtctcttttgcaaatgcaact
ctcgtgctttctattggtgagacagttgaagaagttagcgacagtgggtttcttgatact
actccatctcttgctgtttcattgattggtgatgattcgttgatgcaagttcatcccagt
ggaataaggcatattagagaagatggccgtattaatgaatggagaactcctggaaagaga
actattgtcaaggttggatctaataggcttcaagtggtaattgcactaagtggaggggag
cttatatattttgaagtggatatgactggccagctgatggaagtcgagaagcatgagatg
tcaggtgatgtagcttgtctggacattgcccctgttcctgagggaagacaaaggtcccgt
ttccttgcagttggatcatatgataacactattcgtatcttgtcattggatcctgatgac
tgtatgcaggttctgagtctgcaaagtgtatcttcaccgccagagtctctcctttttctt
gaagttcaggcctctattggtggagaagatggtgctgatcaccctgccagcctttttctt
aatgctggtttacaaaatggggttttattcaggactgtggtggatatgataactgggcag
ctttcagatgcacgttcacgtttcttggggcttagagcccctaagctcttttccattgtt
gtgagaggacggcgtgctatgctctgcttgtcaagtagaccgtggctaggttatatacac
caagggcattttcttttgacgcctttatcatatgagactcttgaatttgcagcctcattt
tcatcagatcaatgtgcagaaggtgtagtagcggttgctggggatgcgttgagggtcttc
acgatagagagattgggcgagactttcaatgaaacagctatacctttaaggtatacacca
agaaggtttgttcttcaacctaaacggaagatggtgataatgatagagagtgaccaggga
gcatacactgcagaagagcgtgaagctgccaaaaaggagtgctttgagacagctgggaat
ggtgaaaatggaaatgcagaacaagtggagaatggtgaagatgatgatggtaatgatcca
ctatctgatgaacaatatggttatcccaagtcggagtcgggaaggtgggtttcttgcatc
agagtccttgacccaaggtcaacacaaaccacttgtctgctagagcttcaggataatgaa
gctgcgtttagcatatgcactgttaatttccatgacaaggagcatggagctttgttagct
gttggtactgccaagggccttcagttttggcccaaaaaatcgtttgaagcagcatacatt
catatttacaaatttaaagaagatgggaaggtccttgagcttttgcacaagacacaggta
gatggtgtgcctcttgcattatgtcagttccaaggaagactactggctggtgtggggtct
gtccttaggttgtatgatttggggaagaaaagactgctcagaaaatgtgagaacaagctt
ttccccaactcaatcacatctatccatacctatcgtgatcggatttatgttggtgacatg
caagagtcattccactactgtaagtatagacgtgacgaaaatcaactatacatatttgct
gatgacacggtaccgagatggctaactgcagcacagcatgtagattttgacacagtggca
ggagctgacaagtttgggaatatctactttgtgcgattacctcaggacgtctcagatgaa
attgaagaagaccctactggtggaaaaataaaatgggagcaggggaagctgaatggagcc
ccaaacaaggttgaggagatagtgcagtttcatgttggtgatgtggtctcttgcttacaa
agagcatcacttattccaggagggggcgaatgtgtaatttacgggactgtgatggggagc
gtcggggcaatgcttccatttacctcgagggatgatgttgacttcttctctcatttggag
atgcatttgaggcaggagttcccacctttatgtggcagggatcacatggcctacagatct
gcctacttcccggttaaggatgtgatagatggagacttgtgcgaacagttcccaaccttg
cctatggatatgcagcgcaaaattgcagatgagttggacaggacaccaggcgagattttg
aaaaagcttgaagaaataagaaacaaaattatttga
DBGET
integrated database retrieval system
