Nicotiana tomentosiformis: 104115373
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Entry
104115373 CDS
T05025
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03013
Nucleocytoplasmic transport
nto03015
mRNA surveillance pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104115373
09122 Translation
03013 Nucleocytoplasmic transport
104115373
03015 mRNA surveillance pathway
104115373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104115373
03041 Spliceosome [BR:
nto03041
]
104115373
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104115373
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104115373
Spliceosome [BR:
nto03041
]
Complex C
Other components
EJC/TREX
104115373
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104115373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
104115373
NCBI-ProteinID:
XP_009624283
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All DBs
Position
6:complement(117088526..117095478)
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AA seq
428 aa
AA seq
DB search
MGENKENDAYEEELLDYEEDDEKAPDLVNGKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVLS
LARDKDLSLRNVRHFVLDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVS
RAAQLDKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaacaaggagaacgatgcttacgaggaagagcttctcgactacgaagaagat
gatgagaaggcccccgatttagtcaacggaaaagttaacggcgagtccgccaagaagggt
tatgttggaattcacagctccggattcagagactttcttttaaagccagagctactgagg
gctattgtggattcagggtttgagcatccctctgaagtgcaacatgagtgtattccacaa
gctattctgggtatggatgttatttgtcaagccaaatctggaatgggcaaaacggctgtt
tttgttctttcgactctgcaacaaattgaacctgttgctggtcaggttgctgccttggtt
ctatgtcatacaagggaattagcttatcagatctgtcatgaattcgaacggttcagcaca
tatttgcccgatatcaaggttgctgttttctatggtggtgtaaacatcaaacttcacaag
gagcttctgaagaatgaatgccctcacattgttgttggaactcctgggagagtactttca
ttggctagagataaggacctatctctgaggaatgtgaggcattttgttctggatgaatgc
gataagatgcttgaatcacttgacatgaggagagatgtgcaggaaattttcaagatgact
ccccatgacaagcaagtaatgatgttttcagcaacactcagcaaggagatccgcccagtt
tgcaaaaaatttatgcaagatcctatggaaatttatgttgacgatgaggccaagttgacc
cttcatggacttgtacagcactacattaaattgagcgaaaccgagaaaaaccggaaacta
aatgatctgctggacgccttggacttcaaccaagttgttatatttgtcaagagtgtaagt
agggctgcacagctggataaattactagtggagtgtaattttccatctatctgcatccac
tctggcatgactcaggaagaaagattgactcgctacaagggtttcaaggagggtcacaag
agaattctcgtcgcaactgatctggttggtaggggcattgacatcgaaagggtcaacatt
gttattaactatgacatgccggattctgcagacacttatcttcacagagtgggtagagct
ggtaggtttggaactaaaggccttgccatcacatttgtgtcttctgcatcagattctgat
gttctaaatcaggttcaagaaaggtttgaagtagacataaaagagcttcctgagcagatt
gatacttctacatacatgccatcttag
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