Nicotiana tomentosiformis: 104115768
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Entry
104115768 CDS
T05025
Name
(RefSeq) DNA polymerase lambda isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03410
Base excision repair
nto03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104115768
03450 Non-homologous end-joining
104115768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nto03400
]
104115768
Enzymes [BR:
nto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
104115768
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
104115768
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
104115768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_8
BRCT
HHH_5
Cdd1
PTCB-BRCT
NTP_transf_2
DUF6305
Motif
Other DBs
NCBI-GeneID:
104115768
NCBI-ProteinID:
XP_009624757
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All DBs
Position
10:49329203..49336366
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AA seq
534 aa
AA seq
DB search
MAPKKDKSPLSDPDGMFSGMVVFLIETGVQSRRLQIWKQKLVQMGAKIEDPFSKNVTHVF
AMDANSLLQKVDRERLSRFKAKLLAYQWLEDSLTKGEKASEDLYVLSLQSRGGSLSPKAD
NGSHPNSSEITPKKSRSSTEDAKNASPRHMNDTKELVVDDSQDTKSASSLASRSSSPEVT
SSEVIDSHNNPVGTSDSSSLYKPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKAIPVI
EKLPFKIESVDQVKHLPAIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVKTISLFGEVWGI
GPATALKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIQTRIPRHEVEEMERLLQKVGE
EILPSVIVVCGGSYRRGKSSCGDMDIVITHADGKSHIGFLPKFIKRLKDMKFLREDLVFS
VHSTEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLA
ESKGFHLDDTGLFPATHSSGGKRTKGSASLKFDTEKQVFDFLGFPWLEPNERNL
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaagaaagataaatctccactttccgatccagatggaatgttttcgggtatg
gtcgtattcttgattgaaaccggagttcaatcccggcggttacagatatggaagcaaaaa
ttggttcaaatgggggctaaaatagaggaccctttttccaaaaatgttactcatgttttt
gcaatggatgcaaattcgcttcttcagaaagttgatcgagaacgtcttagtcgctttaaa
gctaaacttctcgcatatcagtggctagaggacagcttgacaaaaggagagaaagcatct
gaggatctgtatgtcttgtccctgcaatcacgaggaggctcccttagtcctaaagctgat
aatggaagtcatcctaatagcagtgaaattacaccaaagaaaagtcgaagttctactgaa
gatgccaagaatgcaagcccaagacacatgaatgacactaaagaacttgttgtagatgat
tcacaagatactaaaagtgcctcttcactcgcatcacgttcttcaagcccagaagtgaca
agttctgaggtcattgattctcataataatcctgttggaacatcagactcatcttcactt
tataagcctccggatttaaaccgaaatatcactgagatatttgggaagctcatcaacata
tatagagcactgggtgacgaccggagatcattcagctattataaagctataccagttatt
gagaaattgccattcaaaattgagagcgtggaccaggttaagcacctacctgctattgga
aagtcgatgcaagaccatattcaggagatagtcaccacagggaagctgtctaaattggaa
cattttgagaaggatgaaaaggtaaaaacaatcagcttatttggagaggtttggggtatt
ggtccagccactgctctaaaactttatgagaaaggacaccgaactcttgatgaccttaaa
aatgaggattcattgactcattctcaaaggttagggttgaaatattttgatgacattcaa
accaggattccacggcatgaggttgaagagatggaacgtctactacagaaagttggagag
gaaattttgcccagtgtgattgttgtgtgtggaggatcatacagacgtggaaagtcttct
tgtggtgatatggacattgttattactcatgctgatggtaaaagtcatataggctttctt
cctaagtttataaaacgtctaaaagacatgaagtttttgagagaagatctggtcttcagt
gttcatagcacagagggtacagattcaggagttgacacatattttgggctctgcacctat
cctggccgagaattgcgacatcgcattgactttaaggtgtatccaagggatatatatgca
tttggactgatagcatggactgggaatgacgtcttgaatagaaggcttagattattggca
gaatccaagggcttccatttagatgatacagggctatttccagctactcatagttcaggt
ggaaaacggactaaaggtagtgcaagcttgaagtttgatacggagaagcaagtgtttgat
ttcctcggatttccctggctagagccgaatgaaaggaacttgtga
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