Nicotiana tomentosiformis: 104116031
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Entry
104116031 CDS
T05025
Name
(RefSeq) protein VACUOLELESS1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104116031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nto04131
]
104116031
Membrane trafficking [BR:
nto04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104116031
Hops complex
104116031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
104116031
NCBI-ProteinID:
XP_009625096
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Position
7:33048329..33059548
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AA seq
843 aa
AA seq
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MAAVTVAAEWQLLHNRYYRKPELYQMQWKHVDLTRNKVACAPFGGPIAVIRDDAKIVQLY
AESALRKLRIFNSAGVQISETVWKNPGGRLIGMSWTDDQTLVCITQDGTIYRYNIHAEPI
EPNSQLTLGADCFTHSVVECIFWGNGVVCINEAFQVYCIPDFNNPKPIKLADTGLEDFPL
CTAVIEPQYTMSGNVEVLMGVADHVLLVEEDGVQQVGLGIGPLQKMVVSQNGKLLAAFTH
DDRLLVISTDFSSTIFDYTFEKSALPPEQLAWCGLDSVLLYWDDKLLMVGPGDPVSYFYD
EPVLLIPECDGVRILSNMSMEFLHRVPDSTVSIFQIGSTLPAALLYDALDHFDRRSAKAD
ENLRLIRSSLPEAVEACIDAAGHEFDVSQQRMLLRAANYGQAFCSHFQRDHIQEMCKTLR
VLNAVRYPDIGIPLSIQQYKLLTPAVLIARLINAHRHLLALQISEYLGMNQEVVVMHWTS
TKITASAAIPDATLLEMLLDKLKICKGISYAAVAAHADKNGRRKLAAMLVEHEPRSSKQV
PLLLSIGQEDTALMKATESGDTDLVYLVLFHIWQKRPALEFFGTIQARPLARDLFVNYAR
HYKHEFLKDFFLSTGQLQDVAFLLWKDSWELSKNPMASKGSPLHGPRIKLIEKSQHLFAE
TKEYVFESKAAEEHAKLLRMQHELEVTTKQAIFVDSSISDTIRTCIVLGNHRAAAKVKTE
FKVSEKRWYWLKVFALATIRDWDALEKFSKEKRPPIGYRPFVEACVDADEKGEALKYIPK
LTDPRERAEAYARIGMAKEAADAASQAKDNELLGRLKQTFAQNAAASSIFDTLRDRLSFP
SVS
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagtcacagtggccgcagaatggcagctcctccacaatcgctactaccggaaa
ccagaactttaccagatgcaatggaagcacgtggacctcacgcgcaacaaagtcgcctgc
gctcctttcggcggtccaatcgctgtcatccgtgacgacgctaagatcgtccaactctac
gccgaatccgcccttcggaagctccgtatcttcaattctgccggcgttcagatctccgaa
actgtctggaagaatcccggcggccgactcatcggcatgtcatggactgacgatcaaacc
ctagtttgcatcactcaggacggcaccatttaccgttacaatatccacgccgagcctatt
gaaccgaattctcagctcacattaggcgctgactgttttactcatagcgtagttgaatgc
atcttctggggaaacggtgtcgtttgtattaacgaggcgtttcaggtttactgcataccc
gatttcaacaacccgaaaccaatcaaattggcggatactggtttggaggattttccgtta
tgtacggctgtgatcgagccgcagtatactatgtctgggaatgtggaggtactgatgggt
gttgctgatcacgtgttgctagtggaagaggatggtgttcagcaagttgggcttggaatt
gggcctctacagaaaatggtggtttctcagaatgggaagcttttggcagcttttacacat
gatgacaggcttcttgttatctctacggacttctccagcactattttcgactatactttt
gagaagtcagccctaccccctgagcagctagcatggtgtggattggacagtgtactactc
tactgggatgataagcttctaatggtgggtcctggagatcctgtcagctatttttatgat
gaaccagttctccttatccctgaatgtgacggggttagaatactctccaacatgagcatg
gaatttcttcatcgtgttccagattcaactgtctccatatttcagattggtagcacacta
ccagctgctttgctttatgatgccttagatcattttgacaggcggagtgccaaggctgat
gagaatctgaggctgatacggtcttcgttgcccgaggctgttgaagcatgtattgatgca
gcaggtcatgagtttgatgtttcacagcaacggatgcttttaagagcagcaaactacgga
caagccttttgcagccattttcaacgggaccacattcaagagatgtgcaaaaccttacga
gtcctaaatgctgtacgttacccagatattggaattcctctcagtattcagcagtataag
ttgcttacgcctgctgttctgattgctcgtcttattaatgctcatcgccaccttcttgcg
ctacaaatatcagaatatcttggcatgaatcaggaagttgtagtcatgcattggacaagt
acaaagatcacagcatcggcggcaatccctgatgccactcttctagaaatgttacttgat
aagctgaaaatatgcaaggggatctcttatgctgcagttgctgctcatgcggataagaat
ggtcgtcgaaagttagctgccatgcttgttgaacatgagccacgttcatctaagcaggtt
cctctattgctaagcattggacaagaagatactgctctgatgaaggctactgaaagtggt
gatactgatctggtttatcttgtccttttccatatctggcagaagagaccagctttggag
ttcttcgggacaatacaggccagacctctagctcgtgatttgtttgttaattatgcacgg
cattacaagcacgaatttctgaaggactttttcctatctactggacaacttcaggatgta
gctttcctattatggaaagattcatgggaattgtctaaaaatccaatggctagcaaagga
tctccacttcatggtccaagaataaaactcattgagaagtcccagcacctttttgcagaa
acaaaggagtatgtttttgaatcaaaagctgctgaagagcatgcaaaattgttaaggatg
caacatgagttggaggtgactacaaaacaggccatctttgtggattcaagtataagtgat
acaattcgtacatgcattgtgctggggaaccatcgtgctgccgcaaaagtcaaaacagaa
tttaaggtttcggaaaagcgatggtattggctcaaagtttttgctctggcaactattagg
gattgggatgccttggagaagttttcaaaggagaaaaggccaccaattggttaccgccca
tttgtcgaggcatgtgttgatgcagatgagaaaggtgaagcgctaaagtacataccaaag
ctgactgatcctcgcgaaagagcagaggcttatgcccgaattggaatggccaaggaagct
gccgatgctgcttctcaggctaaagataatgaattacttgggaggttgaagcagactttt
gctcaaaatgcagcagcttcatcaatttttgacacactgcgagaccggttatccttccca
agtgtttcttga
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