Nicotiana tomentosiformis: 104116213
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Entry
104116213 CDS
T05025
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104116213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104116213
03009 Ribosome biogenesis [BR:
nto03009
]
104116213
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104116213
Spliceosome [BR:
nto03041
]
Complex A
U1 snRNP components
U1 related factors
104116213
Complex B
104116213
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
Pre-60S particles
Helicases
104116213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
104116213
NCBI-ProteinID:
XP_009625322
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All DBs
Position
12:117639596..117645889
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AA seq
501 aa
AA seq
DB search
MSGYDSRPADPGSYRDRRSDSGFGGGSSYRSSSSSRKDYEGKDSPRKVDLDGLTPFEKNF
YVESPSIAAMTESEVEEYRRRREITVEGRDVPKPVKSFHDVGFPDYVIQEIEKAGFTEPT
PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE
LAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNNTN
LRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLLNAY
KVVIGSADLKANHAIRQHVEIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQVTRQ
LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINYDFPG
SLEDYVHRIGRTGRAGASGTAYTYFTAANARFAKDLINILEEAGQKVSPELAKMGRGAPP
PPGLGGFRDRGRGYGGNRQWS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagtggctatgatagccgtccggcggaccctggctcttaccgcgaccgtcgcagtgac
tcgggctttggtgggggctcgagttatagatcatcgtcatcgagcaggaaagattacgag
ggtaaggattcgccacggaaggtcgatttggatggattgactccattcgagaagaatttc
tatgttgaatcaccgtccatcgcggcaatgaccgaaagtgaggtggaagagtatagacga
cgccgggagatcactgttgagggccgtgacgtgcccaagcctgtaaagtcctttcatgac
gtaggatttccagattatgtcatccaagaaattgaaaaggctggcttcactgaacctaca
cctattcaagctcaaggttggcctatggccttgaagggccgtgatctcattggtatagca
gaaacagggtctgggaagacacttgcttatctgttgcccgcaattgtgcacgttaatgcc
cagccatttttagctcctggagatggtcctatcgtcttagtgttagccccaactcgtgaa
ctagctgttcagattcaacaagaagccactaaatttggtgcatcgtcacggattaagaat
acctgcatttatggtggggttccaaaggggccccaggttcgtgatcttcagaaaggtgtt
gaaattgttattgccacacctggaaggttgattgatatgctagaatctaataatacaaat
ttgcgaagggtgacatatctcgtgctggacgaggctgaccgcatgctagacatgggtttt
gaacctcaaatccgcaaaattgtttctcagatacgtccagatcgtcaaacgttgtattgg
agtgccacatggcccaaggaagttgagcagcttgcaaggcagttccttttaaacgcatac
aaagtggttattggttcagctgacctgaaagctaatcatgctattcgccagcatgtggaa
attgtctcggagagccagaagtataataaattagtaaagttgctggaagatattatggat
ggtagtcggattttaatattcatggataccaaaaaggggtgtgaccaagtaactcggcag
ctccggatggatggttggcctgcactttctattcatggtgataagagtcaggcagaaaga
gattgggtcctttcagaattcaaagctggaaagtctcctataatgacagctacagatgtt
gctgctcgaggtctagatgtgaaggatgtaaaatttgtaatcaactatgattttcctgga
tcgctggaggactatgttcatcgcattggtagaacgggaagggctggtgcatcagggaca
gcatacacctactttaccgcggcgaatgctaggttcgcgaaggaccttattaacattctt
gaggaggctggacagaaggtcagtcctgaactggcaaaaatgggacgtggtgctcctccc
cctccaggtcttgggggttttcgagaccgtggaaggggttatggaggcaataggcaatgg
agctaa
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