Nicotiana tomentosiformis: 104116359
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Entry
104116359 CDS
T05025
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104116359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104116359
03009 Ribosome biogenesis [BR:
nto03009
]
104116359
04131 Membrane trafficking [BR:
nto04131
]
104116359
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nto04147
]
104116359
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
104116359
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
104116359
Membrane trafficking [BR:
nto04131
]
SNARE
SNARE associated proteins
Others
104116359
Autophagy
Aggrephagy
Other aggrephagy associated proteins
104116359
Exosome [BR:
nto04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
104116359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_18
AAA_28
ATPase_2
AAA_17
Mg_chelatase
nSTAND3
IstB_IS21
AAA_lid_PRS2_C
Viral_helicase1
Parvo_NS1
ABC_tran
AAA_7
Vps4_C
DUF815
TsaE
NB-ARC
NACHT
RCF1-5-like_lid
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
104116359
NCBI-ProteinID:
XP_009625492
LinkDB
All DBs
Position
3:complement(113763391..113768238)
Genome browser
AA seq
810 aa
AA seq
DB search
MADPTSSTSDPTSSKNDFSTAILERKKSPNRLIVDEALNDDNSVVSMHPAKMEELQLFRG
DTVLLKGKKRKDTVCVVLVDDQCEEPKIRMNKVVRANLKIRLGDVVSVYQCPDVKYAKRV
HILPIDDTIEGMTGNLFDAYLKPYFLESYRPVRKGDLFVVRGGMRSVEFKVVETEPGEYC
VVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGV
KPPKGILLYGPPGSGKTLIGRAVANETGAFFFLINGPEIMSKLAGESEGNLRKAFEEAER
NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRYHVIVMGATNRPNSIDP
ALRRFGRFDREIDIGVPDEVGRLEILRIHSKNMKLADNVDLERVARDTHGYVGADLAALC
TEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGASNPSALRETVVEVPNIS
WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC
QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAMQRGHSVGDGGG
AADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQ
IFKACLRKSPVSKDVDLAALSRYTHGFSGADITEICQRACKYAIRENIEKDIEREKKRRE
NPEAMDEDDSDEVAEIKPAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGTEFKFA
EHAANTTATGATTDPFASANAAGDDDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcggatccaacttcttccacttccgacccgacaagtagtaaaaatgatttttcaact
gcaattttggagaggaagaaatcccctaaccgacttattgttgatgaggccttaaatgat
gacaattcagtggtatctatgcaccctgctaaaatggaagagctgcaactatttcgagga
gatactgtcttgctaaagggtaaaaaacggaaggacactgtttgcgttgtccttgtggat
gaccaatgtgaagaacctaagatcagaatgaacaaagtagttcgagctaatctcaagatt
cgtcttggggatgttgtatctgtatatcagtgtcctgatgttaagtatgcgaagcgtgtt
cacattcttcctattgatgacactattgagggtatgactggcaacctgtttgatgcgtac
ttgaagccatacttcttggagtcttaccgtcctgtcaggaagggcgatctcttcgtagtc
agaggtggtatgcgcagtgttgaatttaaagtggttgagacggagcctggagaatattgt
gttgttgcacctgatacagagatcttttgtgagggagaacccatcaagcgtgaggatgag
gagagactaaatgaagttggatatgatgatgttgggggtgtgaggaagcagatggctcag
attcgtgagctcgttgaactccctctgaggcatcctcagctattcaagtcaattggtgtg
aaaccaccaaaaggtattctcctgtatggtcctccgggatcggggaagaccctgattgga
agagctgtggccaatgagactggtgcatttttctttctgattaatgggcctgaaataatg
tctaaattggctggtgagagtgagggtaacttgaggaaagcattcgaggaagccgaaagg
aatgcaccatctatcatatttattgatgagctagattcaattgctccaaagcgagaaaag
acacatggtgaagttgagcggcgtattgtttcccaacttctgacattaatggatgggctc
aagtctcgatatcatgtgattgtcatgggggccaccaacagaccaaacagcattgatcct
gctctcaggagatttgggagatttgaccgagagattgacattggcgtaccagatgaagta
gggcggttggagatcctacgtattcatagtaaaaatatgaagctcgctgataatgttgat
ctagaaagagttgcaagagacacgcatggttatgttggagctgatcttgctgccttgtgc
actgaggctgcactgcaatgtatcagagagaaaatggatgttattgacttggaggatgag
accatcgatgccgaagttttgaattcaatggctgtcactaatgagcattttcaaactgct
ctgggtgcttcaaatccatcagctttacgtgaaacagttgtggaggttcccaacatctct
tgggaggatattgggggtctggacaatgtcaagcgggaacttcaagagactgttcagtac
ccagttgagcatcctgagaaatttgagaagtttggcatgtctccttctaaaggggttctt
ttctatggacctcctggttgtggcaaaactctgcttgccaaagctattgcaaacgagtgt
caggctaactttataagtgtgaaaggacccgagttgcttacaatgtggtttggagaaagt
gaagcaaatgttcgggaaatatttgacaaggcacgacagtctgctccatgtgtactgttc
tttgatgaacttgattccattgctatgcagagggggcattctgtgggagatggtggtggt
gctgctgatagagtactcaatcaattgttgacggaaatggatggaatgacagcaaagaaa
acagtattcatcattggggcaactaataggccagacattattgaccctgcattgctcaga
ccaggtcgtctagaccaattaatttacatccccctccctgatgaagcttcccgtcttcaa
atcttcaaagcatgtttgcggaagtcccccgtctctaaggacgtggatctggcagctctc
tcacggtatacacatggttttagtggtgcagacataactgagatttgtcagcgagcatgc
aaatacgccattagagaaaacattgaaaaggatattgagagagagaagaagaggagagag
aaccctgaagccatggatgaagatgacagtgatgaagtggctgagataaagcctgcacac
tttgaggagtccatgaaatatgctcgaagaagtgtgagtgatgctgacattaggaagtac
cagctttttgctcaaacattacagcaatcacgcggatttggaaccgagttcaaatttgca
gagcacgcagctaatactacagcaactggggcaacaaccgacccgttcgcttctgctaat
gctgctggagacgacgacgacttgtatagttaa
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