Nicotiana tomentosiformis: 104116694
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Entry
104116694 CDS
T05025
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nto03036
]
104116694
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104116694
microRNA pathway
RISC loading complex
104116694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
Cas3-like_C_2
Dicer_dsRBD
dsrm
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
104116694
NCBI-ProteinID:
XP_009625898
LinkDB
All DBs
Position
5:125603390..125614474
Genome browser
AA seq
1402 aa
AA seq
DB search
MDPTEVTVSENQQLCAVSLPFARSYQLEALETALKQNTIVYLETGSGKTLIAIMLLRSYA
YLLRKPSPYIAVFLVPTVVLVAQQGDALIMHTDLKVGKYWGEMGVDYWDAATWQQQVDNH
EVLVMTPAILLAALRHSFLKIEMIKVLIFDECHNARAKHPYACIMKEFYHRQLTLESAQL
PRILGMTASPIKTKGSSAEFTWKMIRDLENLMNSKVYTCVSESVLAEYIPFSTPKLKIYQ
HVDIPCTLFVSLVSDLIRLKDKYEDSISKSSLSDLSAGSAKKRLSKLYSSFVFCLSELGV
FPAFKAAEFLSSEESDFFSWGELDVCAQTIVRNFSLGASKVFSARIPSGSHWSLGGDIHA
NVDAGYLTSKINSLIESLLEYRDLKDLRCIIFVERIITAIVLRSLLNELLPELSGWKTEY
TAGHSSMLQSQSRNVQNKIVEEFRKGVVNIIVATSILEEGLDVQSCNLVIRFDPSATVCS
FIQSRGRARMQNSHFIMMVGSGDASTLTRMQNYMKSGEIMRQESLRNASIPCSPLDDELH
NEPCYKVETTGAVVTLSSSVSLLYFYCSRLPSDGYYKPSPRCVIEEETETCTLHLPKNCP
LQKVISVKGNTKILKQLACLEACKELHREGALTDNLVPDIVEEEAIVKELGCQIYTDEES
KYFPPELVSHCANDTEAVYYCYVVDLQHDSYSNYQLRGIILAVRTRLKLDDERLIFDLDV
DNGSLLVQVNYSGVVRLTSEEILRCQRFQVSLFRILLDRDLSKLQDALSAVQLPVGSAVS
DYLLLPSLGSTQNPQINWECVNSVLFPSQVLGDKHIDCCSTQGRKRSVNIKTGVVCSCML
ENSLVCTPHNGYVYCITGFLDNLDCNSLLEQRTGESITYKEYYKKRHGINLCFEGEPLLR
GKRIFKVHNYLQRCRSQKAKDSTDSSVELPPELCSIIMSPISISTLYTYSYVPSVMHRIE
SLVMASNLKRMHSDQCTQNIFIPTAKVLEAITTKKCVEKFHLESLETLGDSFLKYAASIQ
LFKTYENHHEGLLTVKKNKIISNAALCKLGCARKIPGFIRNEPFDLKGWLIPGDNSQVRN
FDEEVLMPSVKMYSRGRQKIKSKRVADVVEALIGAFLSSGGEVAALSFMKWLGIDIDFVA
APTLRHFPMNAEKLVNIRYLESLLDYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGD
AVLDYAVTAHLYFKYPGLSPGLITDLRSASVNNECYAQAAVKAGLHKHILHASQDLQRQM
VNTVLNFEKLDPVSTFGWESETTFPKVLGDVIESLAGAIFVDSGFNKDVVFQSIRTLLEP
LITPDTVKLHPVRELSELCDQKGYIKKKNVVSRENGVAYITVEVEADGVSHKFTCSERDK
KMAEKVACKNVLKLLKECASDA
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggatccaactgaagttacagtctctgaaaaccaacagctctgcgctgtctctctgcct
tttgcaagaagttatcagttagaggcattggagacggcattaaagcagaacactattgtt
tatttggagactggttcgggaaagacccttatcgctattatgcttctgagaagctatgct
taccttcttcgaaagccgtctccctacatagctgttttcttggtcccgactgttgttttg
gtggctcagcaaggagatgctctcattatgcatactgacttgaaagtgggcaagtattgg
ggagaaatgggtgtcgattattgggatgctgctacatggcaacaacaggtggacaatcat
gaggtgctggtaatgacacccgcaatactacttgctgctttgaggcatagcttcttaaaa
attgaaatgatcaaagttctaatatttgatgaatgtcacaatgcacgagccaaacaccct
tatgcctgcataatgaaggaattttatcatcgtcaattaaccctcgaaagtgcacaactt
ccgagaatattgggaatgactgcttcccctataaagactaaaggttctagcgcggaattt
acttggaaaatgattcgtgacctcgagaaccttatgaattccaaggtatacacgtgtgtc
agtgaatctgttttggccgagtatatcccattctcaactccaaagctgaagatatatcaa
catgtggatattccgtgcacattgtttgttagtttagtttctgacctgataaggttgaaa
gacaagtatgaagattcgatttcaaaatcgagcctatctgatttaagtgctggttctgca
aaaaaaagattgtcaaaactatattcgtccttcgtattttgtttgagtgagctgggtgtt
tttccggctttcaaggcagccgagttcttgtcctctgaagaaagcgacttcttttcatgg
ggagaattagatgtttgtgctcaaacgattgttagaaatttcagtttgggtgcatctaag
gtcttctcggctcgcataccatctggttcacattggtcacttggtggtgatattcatgca
aatgttgatgctggatatttgacatccaaaattaatagtcttatagagtctcttcttgag
tacagagacctgaaggatttgagatgcatcatatttgttgagagaatcattacagctatt
gttcttcggtctttgttaaatgagttgcttccggaattaagtggttggaaaaccgagtac
actgcaggacatagttctatgctgcagtcacagagcagaaatgttcaaaataaaattgtt
gaagaatttcgcaagggtgtggtcaacattattgtagcgacttctattcttgaagagggt
ttggatgttcaaagttgcaaccttgtcattcgatttgatccctcagcaaccgtttgtagc
tttatacagtctcgtggtcgagctcgaatgcagaactcacactttattatgatggttggg
agcggggatgcttcaactctcactcgcatgcaaaattatatgaaaagtggggagatcatg
cggcaagaatcattacgcaatgcttctattccgtgttcacctcttgatgatgaattgcac
aatgaaccttgctataaagttgaaacaactggagcagttgtcaccctcagttctagcgtg
tcattgttatacttctattgctcaaggctaccttcggatgggtactataaacccagtcct
aggtgtgttattgaggaggaaacagaaacctgcaccctacatcttcccaaaaattgccca
ctgcaaaaagttattagtgtgaaagggaataccaaaatattgaagcaacttgcttgcctt
gaagcttgtaaagaacttcatcgtgagggtgcattgaccgacaatcttgttcctgatatc
gtggaggaagaagccatcgtcaaagaattgggatgtcaaatctatactgatgaagaatca
aagtactttccaccagaattggttagtcattgtgccaatgatacagaagcagtgtactac
tgctacgtagttgatttgcaacatgactcttacagcaattaccagcttcgtgggataata
cttgctgttaggacaaggctcaagttagacgatgaaagattgatttttgacttggatgtt
gataatggaagcttgctagttcaagtaaattatagtggagttgttaggcttacgtctgaa
gagattttacgatgtcagaggtttcaagtcagtctattcagaattcttcttgaccgcgat
ctgagtaagctgcaggacgctttgtctgcagttcaactgcctgttggttctgcagtttct
gattatcttttgcttccatctttgggttcaactcaaaaccctcaaataaattgggaatgt
gtgaattctgtgctgtttccttctcaagttcttggggataagcatattgattgttgttct
acacaaggtcgcaaacgcagtgtgaacatcaaaactggggtggtatgcagctgcatgttg
gagaactcattggtctgtacgcctcataatggctatgtgtactgcattaccggttttttg
gataatttagattgcaactcattgctggaacagagaactggagaatccattacctacaaa
gaatactacaaaaagcggcatgggatcaacttatgctttgaaggagaaccacttcttagg
gggaaacgcattttcaaagtgcacaattaccttcaaagatgcagaagtcagaaggctaaa
gattcaactgattcatctgttgaattgccccctgaactttgttccatcatcatgtcacct
atctctatttctaccctttatacctattcatatgttccttcggtcatgcatcggattgag
tcattggttatggcctcaaacttgaaaaggatgcactcggatcagtgcacgcaaaacatt
tttattccaaccgctaaggttctggaggcaattactacaaagaaatgcgttgaaaagttt
catttggaatcacttgagacacttggagactcttttctcaaatatgctgcgagtatacag
ctgttcaagacttatgaaaatcatcacgagggtctactcactgttaagaaaaacaaaatt
atttccaatgctgcattgtgcaagcttggatgtgctcgtaaaataccgggatttattcgt
aatgagccattcgatcttaaaggatggctcattcctggtgataattctcaagttcgcaat
ttcgatgaagaagtgctgatgccttctgtaaaaatgtatagtaggggaaggcagaagatt
aaaagtaagagagtagctgatgttgttgaagcactgataggtgcctttctcagctcaggt
ggtgaagtagcggctttgtcatttatgaaatggcttgggatcgacattgattttgtagct
gcacctacgctgaggcacttccccatgaatgctgagaagctagttaatattcgatacttg
gaatcactgctagattacaagttccatgatccttctctgcttgttgaagctctaactcac
ggatcttacatgctacctgagattccacgatgctatcagcgcttggaatttcttggagat
gcagtgctagattatgctgtcacagcgcatctctatttcaaatatccgggactgtctcca
ggactcattactgatttgaggtctgcctccgtaaataatgaatgctacgctcaggctgct
gttaaggctggcctacacaagcacattcttcatgcttcacaagatctgcagagacagatg
gttaatactgttctgaattttgagaaattggatcccgtgtccacgttcggatgggagtcc
gaaactacttttccaaaggtgcttggagatgttattgagtctcttgccggggcaatcttt
gttgattctggcttcaacaaagatgttgtgtttcagagcatacgaacacttctggaaccg
ttgattacaccggatacagtaaagctccatccagtcagagagttaagtgaactatgtgac
cagaaaggttatataaagaagaagaacgttgtctctcgtgagaatggtgtggcgtatatt
acagtagaggttgaagcagatggtgttagtcacaagttcacgtgctcggaacgagacaaa
aaaatggccgagaaggtggcttgcaaaaatgtactcaaattgctgaaggaatgtgcatct
gatgcttag
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