Nicotiana tomentosiformis: 104116802
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Entry
104116802 CDS
T05025
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104116802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104116802
03036 Chromosome and associated proteins [BR:
nto03036
]
104116802
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
104116802
Coactivators
SAGA/TFTC/STAGA complex
104116802
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
104116802
STAGA complex
104116802
TFTC complex
104116802
SAGA complex
104116802
SLIK complex
104116802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_IP5PC_F
Beta-prop_WDR35_TULP_N
LisH_PAC1
PALB2_WD40
WD40_like
RAB3GAP2_N
LisH
Cytochrom_D1
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
104116802
NCBI-ProteinID:
XP_009626034
LinkDB
All DBs
Position
6:complement(118560026..118573061)
Genome browser
AA seq
666 aa
AA seq
DB search
MDEEEIEKAVVAYLKKKGFKQTELAFQEEQQLNKNTNSQVDPDVTKKILSFSEFETGPER
YQEEYSKLRSWAYSSLDLYKHELLRVLYPVFIHCFMELVARGHIQEARAFFDSYREDHEM
MHLRDLQKLEGVLSPSHLKEMEFAHSIRLSKVNIKMCQYSYDLLLQYLHKTESITMLGII
NERINFQVSPGQPGSISDDAEVVTLVGSGPDASLLNQKEIHWGLLEDSLEERLEKTGGMV
PDSEKFDGDPKEGEVEENKKKSVEGGKQGASLKKQKKDKVGVATGKSSRTEGSTVTTAPR
VKPELALPAIPAEVEHSILEDLRNRVQLSNAALPSVSFYTFVNTHNGLNCASISHDGSLV
AGGFSDSSLKVWDMAKLGQQTGPSFLQGETDSPSSEHVLGSSGGRRCYTLFQGHSGPVYS
ASFSPYGDFLLSSSSDSTIRLWSTRLNANLVCYKGHNYPVWDVQFSPVGHYFASCSHDRT
ARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGDCVRIFIGH
RSMILSLAMSPDGRYMASGDEDGTVMMWDLSSGRCITPLVGHSSCVWSLAFSGEGSLLAS
GSADCTVKLWDVTTSTKAPLKEENKPGINNRLRSLKTLPTKATPVYALRFSRRNLLFAAG
AFSKGA
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaagaaatagagaaagcagtggtagcgtatttgaagaagaagggtttcaag
caaactgagcttgcttttcaagaagaacagcaacttaataaaaacacaaattcccaggtt
gaccctgacgttaccaaaaaaatcctctctttctctgaatttgaaactggtcctgaacgg
taccaagaagaatatagcaagcttcgatcatgggcttatagttcactggatttatataag
catgagttgcttcgtgttttatatcctgtgtttattcattgtttcatggaacttgtcgct
agaggtcatattcaagaagctcgagccttttttgatagttaccgtgaagaccatgagatg
atgcatttgcgtgatctgcagaagttagaaggtgttctctcaccgtcccatctaaaggaa
atggaatttgctcattctatacggcttagcaaagtgaacataaagatgtgtcagtactct
tatgaccttttgctgcaatacttgcacaagacagagtctattacaatgcttggaatcatc
aatgagcgcataaattttcaagtttctcctggacagcctggctccatatctgatgatgca
gaagttgtaactctcgttggaagtggccctgatgctagcctcttaaatcagaaagaaatt
cattgggggctgcttgaagactctttagaagaacggttagaaaagacaggaggtatggtt
ccagattcggaaaagtttgatggagatcctaaggaaggagaagtggaagaaaacaagaag
aagtcagttgaaggtggaaaacaaggtgcatctcttaaaaagcaaaagaaggacaaagtt
ggggttgcaacagggaaatcttctcgtacagagggcagcacagtgacaactgcaccacgt
gtcaaaccggaacttgctttacctgctattcctgcagaggtagaacattctattctggaa
gacttgaggaaccgtgtgcagttgagtaatgcagcattgccctctgttagcttctataca
tttgttaatacacataatggactaaactgtgcatcaatatcacatgacggatcactggtg
gctggtggattctcagactcgtctttgaaggtttgggacatggcaaagcttgggcaacaa
actggtccatcttttttgcagggggaaactgattcaccttctagtgagcatgtgcttggc
tcaagtggtggaagaagatgttatacattatttcagggccattctgggcctgtttattct
gcgtcctttagtccgtacggggattttcttctatcttcttcatcagattcaacaattcgc
ttatggagcacaaggttaaatgctaatcttgtttgctacaaaggccacaattacccagta
tgggatgttcagtttagtccagttggtcattattttgccagttgttcacatgaccgcact
gcaagaatctggtctatggacagaatacagcctctgagaataatggccggacacttatca
gatgtggattgtgtgcaatggcatgcaaactgcaattacattgcaactggatcaagtgac
aaaactgtacgcttgtgggatgtccaaagtggcgactgtgtcaggattttcattggtcat
aggagtatgatcctatcattggcaatgtctcctgatggtcgatatatggcatcaggtgat
gaagatggaacagtcatgatgtgggatctctcaagtggacgttgtattactcctttggtt
ggacactcctcctgtgtatggtcacttgcttttagtggtgaaggttcacttcttgcatct
ggctctgctgattgcactgtgaaattatgggatgtaaccacaagcacaaaagcgccactg
aaagaagagaacaaacctggaattaacaatagactacgatcattgaagaccctgcctaca
aaagctactccagtctatgctctgcgcttttctcgaagaaatcttctatttgctgctgga
gctttctcgaagggtgcatga
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