Nicotiana tomentosiformis: 104116890
Help
Entry
104116890 CDS
T05025
Name
(RefSeq) uncharacterized protein isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
104116890
Enzymes [BR:
nto01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
104116890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
EMC7_beta-sandw
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
104116890
NCBI-ProteinID:
XP_009626140
LinkDB
All DBs
Position
12:complement(92495048..92500626)
Genome browser
AA seq
635 aa
AA seq
DB search
MSSTGLRLNAQNDYVVINNGVVEITWTNPGGIIRGIKYKGIDNLLELNNKDLNGGFWDLN
WSEAGSTKTRGKFDTIEGTDLQVIVENEKQIELSFTRMWNPAVQGEQAPLYIDRRFVVFR
DVPGFYSYAIFEHTKDMPSFNLNTTRIAFMLNKEKFHYMAITDDRQRFMPSAEDRLAERG
QALAYPEAVLLVDPIEPEFKGEVDDKYQYSLENKDNQVHGWICFDPPVGFWQITPSNEFR
TGGPFKQDLTSHVNPTTLAIFLTSHYAGPDLLVKFEPGEEWKKVLGPVFTYFNSVSDKEM
ALTLWDDAKRQMNKEVQSWPYSFPASEEFPKCGQRGIVKGRLLVQDRYLSKGNLPGKDAY
VGLAAPGDAGSWQRENKGYQFWTTTDEDGYFVIENIRAGSYSLYALVPGFIGDYKYEVVI
TITEGCNIELGELVYEPPRDGPTLWEIGIPDRSAAEFYIPDPNPKYVNKLYINQDKFRQY
GLWERYAELYPDNDLVYTVGVNEYQKDWFFAQVNRKIGENAYQSTTWKIKFKIDNVNLVG
AYTLRLALAAANHAELQVRINDPTADPPLFSSGEIGGDNAIARHAIHGIYWLFNVTIPGS
LLLGGENIILLTQTKTANAFQGIMYDYIRLEGPSC
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctacaggactgcggttaaatgctcaaaatgactatgtggtgataaacaatgga
gtagtggaaataacatggacaaatccagggggaattatcagagggataaagtacaaggga
attgacaacttgctcgaactaaacaataaagatttgaatggagggttctgggaccttaat
tggagtgaggctggtagtacaaaaacaaggggaaagtttgacacgatagaaggaacagat
ttgcaagttatagtggaaaatgagaagcagattgagctgtcattcacaagaatgtggaat
ccagcagtccagggtgaacaagctcctttatatattgatagaaggtttgtagtatttcgt
gatgtcccaggattttactcatatgccatctttgagcacacgaaagacatgccttctttc
aaccttaacacaaccagaatcgctttcatgctcaataaagaaaagtttcactacatggcc
ataacagatgatagacaaagatttatgcctagtgcagaagaccggcttgcagagagaggc
caagcgctagcctatcctgaagcagttctccttgttgatcctatagaacctgaattcaaa
ggagaggtggatgacaaatatcaatattcacttgaaaacaaagataatcaagtgcatgga
tggatatgttttgaccctcctgtgggattttggcaaatcactcctagcaatgaatttaga
acaggaggacccttcaaacaagatttaacctcgcatgtgaacccgactacccttgctata
tttctaacttcccactatgctggtccagatcttttggtaaaattcgagcctggtgaggag
tggaagaaagtcctcgggcccgtgttcacatattttaattctgtatcagacaaagaaatg
gctctaacactttgggatgatgcaaaaagacagatgaacaaagaagtccagtcctggccc
tatagtttcccagcttctgaagaatttcctaagtgtggtcaaaggggcatagttaaaggt
cgattgttagtacaagacagatacttaagcaagggaaatttacctggaaaagatgcatat
gtaggactcgcagctccaggagatgctggatcatggcaaagagagaataagggttaccaa
ttttggactacaacagatgaagacggctactttgtcattgagaacatacgtgcaggatca
tatagtctttatgcattggtacctggatttatcggggattacaagtatgaagttgtaata
actataacagaaggttgtaatattgagttgggtgagcttgtttatgagcctccaagagat
ggtcctaccttgtgggagatcggtatccctgatcgctctgctgcagaattttatattccc
gatccaaacccaaaatatgttaacaaactttacataaatcaagacaaatttagacagtat
ggtttgtgggagagatatgcagagttatatcctgataatgatttagtctacacagttgga
gttaatgagtatcaaaaggactggttctttgctcaggttaacaggaagataggcgaaaat
gcatatcaaagtactacatggaaaatcaagttcaagattgataatgtaaatctggttgga
gcatacacattgcgtttggcgcttgcagctgccaatcatgctgaactgcaggtccggatc
aatgatccaacagcagatcctcccctattttcaagtggagaaatcggaggagacaatgca
attgcaaggcatgctattcatgggatctattggttgttcaatgtaacaatacctggttct
ctacttttgggaggagaaaacatcatattattgacacaaacaaagaccgccaacgctttc
caagggattatgtatgactatattcgcttggaaggtccctcgtgctag
DBGET
integrated database retrieval system
