Nicotiana tomentosiformis: 104116967
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Entry
104116967 CDS
T05025
Name
(RefSeq) protein RDM16
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104116967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nto03041
]
104116967
Spliceosome [BR:
nto03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104116967
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
104116967
NCBI-ProteinID:
XP_009626223
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Position
5:22433184..22438742
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AA seq
854 aa
AA seq
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MEREKSSRRERASREDDDDRRHHHRDRSKHHHRDDENRHRSDDRKGRDRERRREKSHESE
VIREKSYDREDSLERRHSHRRKDDREKREKSYEREDSVERKNAHKRKERGEESVDKSNGG
DEKRARVSEDKKEERRERRRFDDKVKKEEEEDVEIDEEMKGKRFEMRIVKEEPKPEPNND
NGHGVGSIDNGVTMGPYNAASRTSPDKSLTRIDPPVTKVSSISTTNENKGVNINRSHAVP
GKSSTDGAASDAGKSATLSLDAKGNAKALIQRQKELAAKLKKIPLLNKGADFTREGSSQI
GRKDSLYAASTDAGILPPPVASSNSGILPTPSSAPSTSTIATVASANTPPSGLPQVVGLT
VTAQNYDKVKRAHELFAKMGFRQDPEFPPLINMFPGQMPPEVTIQPKPARAPVLRLDALG
REIDEQGNVVNVPKPSSTLKVNINKQKKENFQILKPELDVDPDKNPHFDPRMGIDKNKIL
RPKRMSFQFVEEGKWSHDAELIKLKQSQYGESRAKELRAKQMQLAKAKAEPDINPNLIEV
AERVITKEKPKEPIPDVEWWDAPLLRSGTYGGMVDGDLTDDMLRMEKITIYVEHPRPIEP
PAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKERQEMIRQGLLEPPKPKVKMSNLMKVLG
SEATQDPTKLEMEIRSAAAEREQAHIDRNIARKLTPDERREKKERKLFDDPNIAAETIVS
IYRVNDLSHPQTRFKVDVNAQENRMTGCAVISEGISVVVVEGGKKSIKRYGKLMLRRIDW
AAAVKKEDDEDEDEDEDKPLNKCVLVWQGTVAKSSFHRFFVHECRTEAAARKVFADAGVP
HYWDLAVNFKDDEF
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggagagagagaaatcgagtaggagagaacgagcatccagagaggacgacgacgaccgc
cgccatcatcatcgcgaccgttcgaagcaccaccaccgcgacgatgagaaccgacaccga
tccgatgatcgaaaaggtcgcgatcgcgaaaggcgtcgcgagaaatcacacgaatcggaa
gttatcagagaaaaatcttacgatagagaggattccttggagagaaggcattcgcatagg
aggaaagacgatcgagagaaacgcgagaaatcgtatgagagagaggattcagtggagaga
aagaatgcgcataagaggaaagagagaggagaagagagtgtggataagagcaatggagga
gatgagaagagagctagggtttcggaggataagaaggaggagagaagagagaggaggaga
tttgatgataaagtgaagaaggaggaggaagaggatgtggaaattgatgaagaaatgaag
gggaaaagatttgaaatgagaattgtgaaggaagaaccgaaacccgagcccaataatgat
aatggtcacggtgttggttccattgataatggtgtgacaatgggaccatacaatgcagca
tcaaggacctccccagataaatctttgactcgtattgatcctcctgttaccaaggtatct
tcaatttctacaacaaatgaaaataagggagttaatattaacagatctcatgcggttcct
gggaaatctagtacagatggggcagcttctgatgctggcaagagtgccaccttatccctt
gatgccaaaggaaatgcaaaggctctcatacaaaggcagaaggagctggcagcaaagctt
aagaaaattcctttgctaaacaagggtgccgactttacgagagagggaagttcacagatt
ggtcgcaaggatagcctttatgccgcttcaacagatgcggggatattgcccccaccggtt
gcatcttcaaattcagggatattacccactccaagttcagcacctagcacatcgactata
gctactgtggcttctgcaaatacgccacccagtggcttacctcaggtcgtggggctcaca
gtcacagcacagaactacgataaagtgaagcgtgcacatgagctttttgctaagatggga
ttccggcaggacccggagtttccccccctcattaacatgtttcctgggcaaatgcctcca
gaggttaccattcagccaaaacccgctagagcccctgttcttcgtttggatgcattaggc
agggaaatcgatgaacagggaaatgtggttaatgtgcctaagccatctagcacccttaag
gtgaacatcaacaagcagaaaaaagaaaacttccaaattctcaaacctgaacttgatgtt
gatcctgataaaaatcctcattttgatccaaggatggggattgacaagaacaaaattttg
aggccaaagaggatgtcatttcagtttgtggaggaaggtaaatggtcccatgatgcagaa
ttaattaagttaaagcaaagccaatatggtgaatcacgagccaaagagttgagggcaaag
caaatgcaattggcaaaggcaaaagcagagcctgacataaatccaaatcttattgaggtg
gcagagagggttatcaccaaggaaaaaccaaaggaaccaattcctgatgttgagtggtgg
gatgctcctctgttacgatctggtacttatggtggtatggtcgatggtgacttaactgat
gatatgttgaggatggagaagatcactatttatgttgaacacccccgccctattgagcct
cctgctgaacctgctccacctcctccacaaccattgaagctgaccaagaaggagcagaag
aaactacgtacccagcgtcgactggctagggagaaagaaaggcaggaaatgatacgtcag
ggcctgttagaaccaccaaaaccaaaagttaaaatgagcaatcttatgaaagttcttggc
tcagaagccactcaggatcccacaaagcttgaaatggagatcagaagtgctgctgctgag
cgagaacaggctcacatagacagaaatattgctcgaaagctcactcctgatgaacgtcgt
gagaagaaagaaagaaaactatttgatgatccaaatatcgcagcggagacgatagtttcg
atatacagagttaatgacctttcacaccctcaaactcgcttcaaagttgatgttaatgct
caggagaatcggatgactgggtgtgcagttatctcggaaggtataagtgtggtggtagtt
gaaggtggtaaaaagtccatcaagcggtatgggaaacttatgcttaggcgaatagactgg
gctgctgctgttaagaaagaagatgatgaagacgaagatgaagatgaagataagcctctc
aacaagtgtgtgttagtctggcaagggactgttgctaaatcaagcttccataggtttttt
gttcacgagtgcaggactgaggctgctgctcgtaaggtctttgctgatgctggggttcct
cattactgggatcttgctgtaaacttcaaagatgatgaattttag
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