Nicotiana tomentosiformis: 104117890
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Entry
104117890 CDS
T05025
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104117890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104117890
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104117890
mRNA degradation factors
5'-3' decay
Lsm complex
104117890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
104117890
NCBI-ProteinID:
XP_009627315
LinkDB
All DBs
Position
6:12542210..12545916
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AA seq
128 aa
AA seq
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MSWSDADHTLFSSSLASYLDRKILILLRDGRKILGTFRSFDQYANIVLEGTSERVMVGNL
YCDIPLGLYVIRGENVVLIGERESAEEELSPHMTCVSAAEIKRAQKAEKDAAELKGSMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttggtcagacgcagatcacaccttattctcttcaagccttgcaagctatcttgat
agaaaaattcttatattactgcgagatggcagaaaaatcttggggacttttcgttctttc
gaccaatatgcaaatatagtattggaaggtacctctgaacgagtaatggttggaaatctc
tattgcgacatacctttgggtctctatgttattcgtggggagaatgttgtgctgatcgga
gaacgggagtctgccgaggaggagctttcgccacacatgacatgtgtgtctgctgcagaa
atcaaaagggctcaaaaggcagagaaggatgcagcagaacttaagggttccatgagaaag
agaatggagtttcttgactttgactag
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