Nicotiana tomentosiformis: 104117972
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Entry
104117972 CDS
T05025
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104117972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nto03400
]
104117972
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104117972
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
PAXNEB
Motif
Other DBs
NCBI-GeneID:
104117972
NCBI-ProteinID:
XP_009627423
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Position
6:complement(136936741..136946163)
Genome browser
AA seq
939 aa
AA seq
DB search
MNENLEEQSKLPELKLDAKQAQGFLSFFKTLPKDPRAVRLFDRRDYYTSHGDDATFIAKT
YYHTTTALRQLGNRADALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWRLVKSG
TPGNLGSFEDILFANNEMQDSPVIAALAPNFGQNGCEVGLGYVDITKRVLGLTEFLDDSH
FTNLESALVALGCRECLVPAETGKSSEYRPMFDAISRCGVMVTERKKTEFKGRDLVQDLG
RLVKGSVEPVRDLVSGFECASGALGCILSYAELLADESNYGNYTVKQYNLNSYMRLDSAA
MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVEEINCRLDLVQSF
VEDAALRQDLRQHLKRISDIERLTHNLERKRASLVHVVKLYQSSIRVPYIKSVLERHDGQ
FATLIRERYIDSLEKWSDDNHLNKFIGLVETSVDLDQLENGEYMISSAYDPNLSALKDEQ
ETLERQIHNLHKQTANDLDLPIDKSLKLDKETQFGHVFRITKKEEPKVRKQLNSHYIVLE
TRKDGVKFTNTKLKKLGDQFQKIVEEYKSCQKELVARVVQTAASFSEVFAGIAGVLAELD
VLLSFADLAASCPTPYTRPNISPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTYIRQVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATH
FHELTALANKNGDNGHKKNAGIANFHVFAHIDPSNRKLTMLYKVHPGACDQSFGIHVAEF
ANFPPSVVALAREKASELEDFSPIAIIPNDIKEAASKRKREFDRHDVSRGTARARQFLQD
FAQLPLDKMDPNVVRQKLSKMKTDLERDAVDSHWLQQFF
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaaatttggaggaacagagcaagcttcccgagcttaaactggatgctaagcaa
gctcaaggatttctctcattcttcaaaaccctgcccaaggaccctagggcagttcgcctc
tttgatcgtcgggactattatacatctcatggagatgatgcaactttcattgcaaagaca
tattaccacacaacaactgcgttacgacagttgggtaatagagctgatgccctttccagt
gttagtgtgagtagaaacatgtttgaaacaatagctcgtgacattctcttggagagaatg
gaccgtactcttgaactatatgagggcagtggttcaaactggagactggtaaaaagtgga
accccagggaatcttggaagttttgaggatattctgtttgctaataatgaaatgcaagat
tctccggtgattgctgctcttgctccaaacttcggtcagaatggatgtgaagttggctta
ggctatgttgatattactaagagagtccttggtttaacagaatttctagatgatagccac
ttcacaaatttggagtctgctttggttgctcttggttgcagagaatgtcttgtaccagcg
gagactggcaaatccagtgaatacaggcctatgtttgatgcaatatctagatgcggcgtg
atggtaactgaaagaaagaaaactgaatttaaagggagagatttggtacaggatcttggt
aggctcgtcaagggttcagtagaacctgttcgagatttggtctctggtttcgaatgtgca
tcaggcgctttggggtgcatactttcttatgcagaactacttgcagatgagagcaactat
ggaaactatacagtcaaacaatacaacctcaatagttacatgagattagattctgctgct
atgagagcactgaatgttatggagagcaaatcagatgctaataaaaattttagcttgttc
ggtctgatgaatagaacgtgtactgctggaatgggtaaaaggttattgcacatgtggctc
aaacagcctttactagatgtagaagagattaactgtaggctggatttagttcaatcattc
gtggaggatgctgcgcttcgccaagatttgaggcagcatctgaaaagaatttcagatatt
gagcggctgacacacaatcttgagaggaaaagagccagtttagtgcacgttgtaaaactc
tatcagtcaagtatcagagtaccatatatcaaaagtgttttggaacgtcatgatgggcaa
tttgcaacactcatcagggaaaggtatattgattctctagagaaatggagtgatgataat
cacctgaataagttcataggtcttgtggaaacttctgttgaccttgatcaacttgagaat
ggagaatacatgatttcttctgcatatgacccaaatttatctgctctgaaggatgagcaa
gagacattggagcgacaaattcataatttgcacaaacaaactgccaatgatcttgatcta
cctattgataagtcacttaaactagataaagaaacacaatttggacacgtcttcagaatt
accaagaaagaagaaccaaaagtcaggaagcagctaaattctcactacattgttctcgaa
acacgtaaggatggggtaaagttcaccaatacaaaactcaaaaaactaggagatcagttc
cagaagattgtagaggagtacaaaagctgtcagaaagaattggtagctcgtgtagttcaa
acagctgcgagtttctccgaggtgtttgcaggtatagctggtgtacttgctgagttggat
gtgttactgagttttgcggatttggctgccagttgcccaactccctacacaagaccaaat
atcagtccaccagatacaggagatattatacttgaagggtgtaggcatccttgtgtggaa
gctcaagattgggttaacttcattcctaatgactgtagactagttaggggagagagttgg
tttcagattatcacaggccctaacatgggtggaaagtcgacctacattcggcaggttggt
gtgaatgtcctgatggcccaagttggctcgtttgttccatgtgacaatgctaccatttct
attcgtgattgtatttttgctcgtgttggcgctggagattgccagctgagaggagtttct
acttttatgcaagagatgcttgagactgcatcgatcttgaaaggagctactgatagatca
ttgattataattgatgagttgggccgtgggacatcaacctacgatggctttggtttagct
tgggctatttgtgagcacattgttgaagaaattaaagcaccaacattgtttgccactcac
tttcatgagctgactgcattagccaacaagaatggagacaatggacataagaaaaatgct
gggatagcaaattttcatgtttttgcacacattgacccttctaatcgcaagctaactatg
ctttacaaggttcacccaggtgcttgtgatcagagttttggtattcatgttgctgaattt
gcaaattttccaccgagtgttgtggccctggctagagaaaaggcatctgagttggaggat
ttctctcctattgccataattccaaatgacattaaagaggcagcttcaaaacggaagaga
gaatttgaccgccatgacgtgtctagaggtactgccagagctcggcaattcttacaggat
ttcgctcagttgccactggataagatggatccaaacgtggtcaggcaaaagttgagcaaa
atgaaaaccgacctggagagggatgcagttgactctcactggcttcagcaattcttttaa
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