KEGG   Nicotiana tomentosiformis: 104117972
Entry
104117972         CDS       T05025                                 
Name
(RefSeq) DNA mismatch repair protein MSH2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    104117972
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nto03400]
    104117972
DNA repair and recombination proteins [BR:nto03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     104117972
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_I MutS_II PAXNEB
Other DBs
NCBI-GeneID: 104117972
NCBI-ProteinID: XP_009627423
LinkDB
Position
6:complement(136936741..136946163)
AA seq 939 aa
MNENLEEQSKLPELKLDAKQAQGFLSFFKTLPKDPRAVRLFDRRDYYTSHGDDATFIAKT
YYHTTTALRQLGNRADALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWRLVKSG
TPGNLGSFEDILFANNEMQDSPVIAALAPNFGQNGCEVGLGYVDITKRVLGLTEFLDDSH
FTNLESALVALGCRECLVPAETGKSSEYRPMFDAISRCGVMVTERKKTEFKGRDLVQDLG
RLVKGSVEPVRDLVSGFECASGALGCILSYAELLADESNYGNYTVKQYNLNSYMRLDSAA
MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVEEINCRLDLVQSF
VEDAALRQDLRQHLKRISDIERLTHNLERKRASLVHVVKLYQSSIRVPYIKSVLERHDGQ
FATLIRERYIDSLEKWSDDNHLNKFIGLVETSVDLDQLENGEYMISSAYDPNLSALKDEQ
ETLERQIHNLHKQTANDLDLPIDKSLKLDKETQFGHVFRITKKEEPKVRKQLNSHYIVLE
TRKDGVKFTNTKLKKLGDQFQKIVEEYKSCQKELVARVVQTAASFSEVFAGIAGVLAELD
VLLSFADLAASCPTPYTRPNISPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTYIRQVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATH
FHELTALANKNGDNGHKKNAGIANFHVFAHIDPSNRKLTMLYKVHPGACDQSFGIHVAEF
ANFPPSVVALAREKASELEDFSPIAIIPNDIKEAASKRKREFDRHDVSRGTARARQFLQD
FAQLPLDKMDPNVVRQKLSKMKTDLERDAVDSHWLQQFF
NT seq 2820 nt   +upstreamnt  +downstreamnt
atgaatgaaaatttggaggaacagagcaagcttcccgagcttaaactggatgctaagcaa
gctcaaggatttctctcattcttcaaaaccctgcccaaggaccctagggcagttcgcctc
tttgatcgtcgggactattatacatctcatggagatgatgcaactttcattgcaaagaca
tattaccacacaacaactgcgttacgacagttgggtaatagagctgatgccctttccagt
gttagtgtgagtagaaacatgtttgaaacaatagctcgtgacattctcttggagagaatg
gaccgtactcttgaactatatgagggcagtggttcaaactggagactggtaaaaagtgga
accccagggaatcttggaagttttgaggatattctgtttgctaataatgaaatgcaagat
tctccggtgattgctgctcttgctccaaacttcggtcagaatggatgtgaagttggctta
ggctatgttgatattactaagagagtccttggtttaacagaatttctagatgatagccac
ttcacaaatttggagtctgctttggttgctcttggttgcagagaatgtcttgtaccagcg
gagactggcaaatccagtgaatacaggcctatgtttgatgcaatatctagatgcggcgtg
atggtaactgaaagaaagaaaactgaatttaaagggagagatttggtacaggatcttggt
aggctcgtcaagggttcagtagaacctgttcgagatttggtctctggtttcgaatgtgca
tcaggcgctttggggtgcatactttcttatgcagaactacttgcagatgagagcaactat
ggaaactatacagtcaaacaatacaacctcaatagttacatgagattagattctgctgct
atgagagcactgaatgttatggagagcaaatcagatgctaataaaaattttagcttgttc
ggtctgatgaatagaacgtgtactgctggaatgggtaaaaggttattgcacatgtggctc
aaacagcctttactagatgtagaagagattaactgtaggctggatttagttcaatcattc
gtggaggatgctgcgcttcgccaagatttgaggcagcatctgaaaagaatttcagatatt
gagcggctgacacacaatcttgagaggaaaagagccagtttagtgcacgttgtaaaactc
tatcagtcaagtatcagagtaccatatatcaaaagtgttttggaacgtcatgatgggcaa
tttgcaacactcatcagggaaaggtatattgattctctagagaaatggagtgatgataat
cacctgaataagttcataggtcttgtggaaacttctgttgaccttgatcaacttgagaat
ggagaatacatgatttcttctgcatatgacccaaatttatctgctctgaaggatgagcaa
gagacattggagcgacaaattcataatttgcacaaacaaactgccaatgatcttgatcta
cctattgataagtcacttaaactagataaagaaacacaatttggacacgtcttcagaatt
accaagaaagaagaaccaaaagtcaggaagcagctaaattctcactacattgttctcgaa
acacgtaaggatggggtaaagttcaccaatacaaaactcaaaaaactaggagatcagttc
cagaagattgtagaggagtacaaaagctgtcagaaagaattggtagctcgtgtagttcaa
acagctgcgagtttctccgaggtgtttgcaggtatagctggtgtacttgctgagttggat
gtgttactgagttttgcggatttggctgccagttgcccaactccctacacaagaccaaat
atcagtccaccagatacaggagatattatacttgaagggtgtaggcatccttgtgtggaa
gctcaagattgggttaacttcattcctaatgactgtagactagttaggggagagagttgg
tttcagattatcacaggccctaacatgggtggaaagtcgacctacattcggcaggttggt
gtgaatgtcctgatggcccaagttggctcgtttgttccatgtgacaatgctaccatttct
attcgtgattgtatttttgctcgtgttggcgctggagattgccagctgagaggagtttct
acttttatgcaagagatgcttgagactgcatcgatcttgaaaggagctactgatagatca
ttgattataattgatgagttgggccgtgggacatcaacctacgatggctttggtttagct
tgggctatttgtgagcacattgttgaagaaattaaagcaccaacattgtttgccactcac
tttcatgagctgactgcattagccaacaagaatggagacaatggacataagaaaaatgct
gggatagcaaattttcatgtttttgcacacattgacccttctaatcgcaagctaactatg
ctttacaaggttcacccaggtgcttgtgatcagagttttggtattcatgttgctgaattt
gcaaattttccaccgagtgttgtggccctggctagagaaaaggcatctgagttggaggat
ttctctcctattgccataattccaaatgacattaaagaggcagcttcaaaacggaagaga
gaatttgaccgccatgacgtgtctagaggtactgccagagctcggcaattcttacaggat
ttcgctcagttgccactggataagatggatccaaacgtggtcaggcaaaagttgagcaaa
atgaaaaccgacctggagagggatgcagttgactctcactggcttcagcaattcttttaa

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