Nicotiana tomentosiformis: 104118112
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Entry
104118112 CDS
T05025
Name
(RefSeq) cell division cycle protein 48 homolog isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104118112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104118112
03009 Ribosome biogenesis [BR:
nto03009
]
104118112
04131 Membrane trafficking [BR:
nto04131
]
104118112
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nto04147
]
104118112
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
104118112
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
104118112
Membrane trafficking [BR:
nto04131
]
SNARE
SNARE associated proteins
Others
104118112
Autophagy
Aggrephagy
Other aggrephagy associated proteins
104118112
Exosome [BR:
nto04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
104118112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_33
AAA_22
AAA_5
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
AAA_28
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
NACHT
AAA_7
NB-ARC
TsaE
AAA_24
DUF815
Vps4_C
AAA_lid_PRS2_C
Zeta_toxin
Zot
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
104118112
NCBI-ProteinID:
XP_009627589
LinkDB
All DBs
Position
7:complement(119066608..119072439)
Genome browser
AA seq
806 aa
AA seq
DB search
MSNKAESSDSKGTKRDYSTAILERKKSPNRLVVDEAVNDDNSVVSLHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPRIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVSREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIGKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFSTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSSGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPLSKDIDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRKDN
PEAMEEDVDDEVAEIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPE
ASTGATGTADPFATSAGGADEDDLYS
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacaaagctgaatcctctgattcgaaagggactaaaagggactatagtacagca
attcttgaaaggaagaaatcaccaaatcggcttgttgtagatgaggcagtcaatgatgat
aactctgttgtctctcttcaccctgagactatggaaaaacttcagctttttcgtggggac
acaatcttgataaagggaaagaaaagaaaagatacaatctgcattgcccttgctgatgac
acctgtgatgagccaaggattagaatgaacaaagttgtcagaaataaccttagggttcgg
cttggtgatgttgtctctgtgcatcaatgtcctgatgtcaagtacgggaaacgtgtgcac
attcttcccattgatgacaccattgaaggggttactgggaatctatttgatgcttatttg
aaaccctatttccttgaagcatatcgaccagtgaggaagggtgatctatttcttgtaaga
ggaggaatgagaagtgtagaattcaaggttattgagaccgatcctcctgaatactgtgtt
gtcgccccagatactgagatattttgtgagggtgaacctgtgagcagagaagatgagaat
cggctagatgaggttggttatgatgatgttggtggcgtgcgtaaacaaatggctcagatc
cgcgagcttgttgagcttccattgaggcatccacaactcttcaaatccattggagtgaaa
cctccgaaaggaattcttctgtatggacctcctggatcaggaaagacattgatagctcgg
gcagttgcaaatgagactggtgcattcttcttctgtattaatgggccagagatcatgtcc
aaactggctggagaaagtgaaagcaatctcaggaaagcatttgaggaagctgagaagaat
gcaccttcaattatctttattgatgaaattgattcgatagctcctaaacgtgagaagaca
aacggagaggtcgagaggaggattgtttctcagctcttgactctcatggatggtctcaaa
tcacgtgcacatgtaattgtcatgggtgctactaatcgccctaatagcattgatcccgcc
ctaagaaggtttggcagatttgacagggaaatagacattggtgtcccagatgaagttggg
cgccttgaggtgctccgtatccatacaaagaacatgaagctcgctgaagatgttgatttg
gaaagaattggcaaagacacacatggctatgttggtgctgatttggcagctttgtgtact
gaggctgcacttcaatgcatcagagagaagatggacgtgattgatttggaagatgaaact
attgatgcggagatattgaactccatggctgtgactaatgagcacttctcaactgccctt
gggacaagcaatccatctgctttgcgtgaaactgttgttgaagttcctaatgtgtcgtgg
gaggatattggaggtcttgaaaatgtcaagcgtgagctccaagagactgttcaatatcca
gtggaacatccagagaagttcgagaagtttggtatgtctccgtcaaagggtgttctcttc
tatgggccacctggatgtgggaaaactttgctggcaaaggctattgcgaacgaatgccag
gccaacttcattagtgttaagggtccagaattgcttaccatgtggtttggagagagtgaa
gctaatgttagagaaatatttgacaaggctcgacagtctgctccttgtgtcctctttttt
gatgagttggactcaattgctactcagagaggaagtagcagcggagatgccgggggagct
gctgatagagttttgaatcaactcctcactgaaatggatggtatgaatgccaagaagact
gttttcatcatcggtgccaccaataggcccgacattattgatcccgcacttctgcggccc
ggccgtcttgaccaattgatttacattcctctccctgacgaggattctcgccatcaaatt
ttcaaggcatgcctgcggaaatcacctctctctaaggatatagatctaagagctcttgca
aaatatacgcaagggtttagcggagctgacattacagagatctgtcaacgtgcatgcaaa
tatgctatccgagagaacattgagaaagatattgagagggagagaaggagaaaggataat
ccagaagcaatggaggaagatgttgacgacgaggtagctgagatcaagcctgctcacttt
gaggaatcaatgaagtatgctaggaggagcgttagtgatgctgatatccgcaagtaccag
gcgtttgctcagacattgcagcagtccagaggttttggcactgagttccgcttcccagaa
gcgagcactggggccactggaactgctgatccatttgcaacttctgctggtggtgcagac
gaagatgacctctatagttag
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