Nicotiana tomentosiformis: 104118169
Help
Entry
104118169 CDS
T05025
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104118169
03041 Spliceosome [BR:
nto03041
]
104118169
03036 Chromosome and associated proteins [BR:
nto03036
]
104118169
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104118169
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104118169
mRNA cycle factors
Common to processing body (P body) and stress granule
104118169
Spliceosome [BR:
nto03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104118169
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104118169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104118169
NCBI-ProteinID:
XP_009627657
LinkDB
All DBs
Position
3:complement(49034952..49044343)
Genome browser
AA seq
610 aa
AA seq
DB search
MRNSWADSVENTATDNVGPSGGSGASASTRRSSYVPPHLRNKPMGAEPPAPSPGGPLSGN
DRSGFNGPTSGSRWGGSRPDYGRQGYSGGGRSGGGWGGRGGGWGREREVNPFGNDADVDL
EQSFDQENTGINFDAYEDIPVETSGENVPPPVNTFADIDLGEAVNLNIRRCKYVKPTPVQ
RYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGDFSQRPRGVRTVFPLALILSPT
RELSMQIHEEAKKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAK
VSLQMIRYLALDEADRMLDMGFEPQIRRIVEQMDMPRPGERQTMLFSATFPKEIQRLASD
FLANYIFLAVGRVGSSTDLILQRVEFVHDGDKRSHLMDLLHAQMANGVHGKQALTLVFVE
TKKGADALEHWLCINGFPATAIHGDRTQQEREQALRTFKRGDTPILVATDVAARGLDIPH
VSHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSMAKPLADLMQEANQEVPE
WLTRYASRSYGGGRNRRSGGGRFGGRDFRRDTSYNRSGGGGVSYYDGGNSSGGYGNYSGG
YGPGVTSAWD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaggaactcgtgggcagattctgttgagaatacagctactgataatgttgggcctagt
ggtgggagtggagcttctgcttctacaaggagatcatcttatgtcccaccacatcttcgt
aacaaaccaatgggagcggagcctccagctccatcaccgggtggcccactatctggtaat
gaccgttcagggttcaatggaccaactagtgggtctcgatggggtggttctaggccagat
tacggacgccaaggttatagtggtggcggccggagcggaggtggttggggtggcagaggg
ggtggttggggtagagaacgggaagtgaatccttttggtaatgatgcagatgtggacttg
gagcaatcatttgatcaggagaatactggtatcaattttgatgcttatgaggatattcca
gtggaaacaagtggagaaaatgtgccacctcctgttaacacatttgcagatatagattta
ggggaggccgttaacttgaatattaggaggtgcaaatatgttaagccgactcctgtccag
cgttatgcaattcccatctccttagcagggcgagatctcatggcctgtgcccagactgga
tccggcaagacagctgcattttgtttccctattattagtggaatcatgaggggggatttt
tcgcaacggcctcgtggggtgcggacagtgtttccccttgctcttattctctcaccaaca
agagagctctcaatgcagatacatgaggaagctaaaaaattctcatatcagaccggtgtt
agagtggtagtggcctacggtggagccccaattaatcaacagctccgagagcttgagaga
ggagttgatattcttgtggcaactcctggaagactggttgatttacttgagagagcaaaa
gtttcattacagatgattagatatttagctcttgatgaggcagatcgtatgctggacatg
ggattcgaacctcaaatcagaaggatagtggagcaaatggatatgcctcgacctggtgaa
aggcagactatgctgttcagtgccacattcccaaaggagattcagagactggcatctgat
tttcttgcaaactacatatttttggcagttggacgggttggttctagtaccgatttgatt
cttcagcgagttgaatttgttcatgatggtgataagagaagccatcttatggacctactt
catgcacagatggctaatggggttcatggcaagcaagctctaactttggtatttgtcgaa
acaaagaagggtgctgatgcattggagcattggctgtgtattaatgggtttcctgcaact
gccattcatggtgataggactcaacaggaaagggagcaagcgttaagaacattcaagaga
ggggatactccaattttagttgcgacagatgtggctgcccgaggccttgatatccctcat
gtttctcatgttatcaattttgaccttcctaatgacattgatgattacgtgcaccgaata
ggcaggacaggtcgtgcaggcaagtcaggattagcaactgctttctttaatgaaggtaat
ctttcaatggccaaaccgctagctgacctgatgcaagaagctaatcaggaggtacctgaa
tggctgactcgttatgctagccgttcatacggaggaggtagaaacaggcggtctggcgga
ggccgttttggtgggcgtgacttcaggagggatacctcttacaatagaagtggtggaggt
ggtgtgagttactatgatggaggtaacagcagtggtggttatggcaattatagcggggga
tatggtcctggagtaactagtgcttgggactag
DBGET
integrated database retrieval system
