Nicotiana tomentosiformis: 104118251
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Entry
104118251 CDS
T05025
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104118251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104118251
03012 Translation factors [BR:
nto03012
]
104118251
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104118251
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104118251
Translation factors [BR:
nto03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104118251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_16
T2SSE
AAA_19
ABC_tran
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104118251
NCBI-ProteinID:
XP_009627755
LinkDB
All DBs
Position
1:126405452..126457453
Genome browser
AA seq
1168 aa
AA seq
DB search
MHSRVGCLLACTKRRSSYSSTCSALLSNLLSSNSNRNIFAACHRRILIGSDVSKVYYVPD
SNFRWLGQQRGFCRYPATAALEQFSDDEYECDYENHPASSSVANIDEWKWKLSLLLRNEK
NQEVVSRDKRDRRDYEQISNLAKRMGLYSEIYGKVVVVSKVPLPNYRPDLDDKRPQREVV
IPLSLQRRVEGLLQEHIDRTQLISGKADNILDGTSSSDMVEDANLDENPDSFLDGSVMEK
VLQRRSLRMRNMQRAWQESPDGNKMLEFRKSLPAFKEKERLLQAIARNQVVVISGETGCG
KTTQLPQYILESEIESGRGAFCSIICTQPRRISALAVAERVSTERGEPLGDSVGYKVRLE
GVKGKNTHLLFCTSGILLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRP
DLRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRAHFLEDLLEITGYKLTSFNQIDDY
GQEKMWKTQKQLAPRKKKNQITALVEDALNKSNFESYSARARDSLACWAPDCIGFNLIEA
VLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLI
FEKAPQNVRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASA
RQRRGRAGRVQPGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLS
AALQPPEPLAVQNAIQFLKMIGALDENEYLTHLGKFLAILPVDPKLGKMLIMGAIFRCFD
PVLTIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAY
EYCWRNFLSAQTLQAIHSLRKQFIFILKDAGLLDADTATNNKLSYNQSLVRAVICSGLYP
GIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGV
SDSIVILFGSTLDSGDTAGHLKMLGGYIEFFMDPTLADCYIKLKEELEMLLQKKLQDPEV
DIHKEGKYLMLAVQELVSGDQCEGKFVFGRENKRPKDSKDTDRFTRDGTNPKSLLQTLMM
RAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKALAEKDAAIEALAWLTQTSEKN
HDEDDKSPPDVTDNMLKLLGKRRRSKRR
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgcattcaagagtagggtgtctcttagcatgcacaaaacggaggtcttcttattcttct
acttgctctgcacttctctctaatctactctcttccaattcaaaccggaatatattcgcg
gcttgccaccggcgaattttgataggcagtgatgtaagtaaggtttattatgtaccggat
tcgaattttcgttggttgggacagcagcgtgggttttgtagataccctgctaccgccgcg
ttggagcaattctccgacgatgaatatgaatgcgactacgaaaatcatccggcttcatca
tcagtggccaatatagacgagtggaaatggaaacttagtctgctgctgcgtaatgaaaag
aaccaagaagttgtatccagagataagagggatagaagagactatgagcagatatctaac
cttgccaaaaggatgggtctctatagtgaaatttatggaaaagttgtagtggtgagcaag
gttcctcttccaaattatagacccgatcttgatgataagcggcctcaaagagaggtagta
atcccactaagtttgcaaaggagagtagaaggcttgcttcaggagcatattgatagaaca
cagctcattagtggaaaagctgacaacattttagatggaacaagctcctctgatatggtt
gaagatgcgaacttggatgaaaatccagattcattcttagatggctctgtcatggagaag
gttcttcagaggcggagcttacgcatgcgtaatatgcagagggcttggcaggaatctcct
gatggcaacaaaatgctagaattccggaaatctcttcctgcatttaaggaaaaggaaagg
ttgctccaagcaattgcacgtaatcaggtggtagtaatttctggcgagacaggatgtggt
aagaccactcaactgccacagtacattctagagtcagaaatagaatctggccgtggagca
ttttgtagcataatttgtacacagcctcgaagaatatctgctttggcggttgcagaaaga
gtgtctacagagaggggagaacctcttggtgactcagtgggctacaaagtacgattagaa
ggggtgaaaggaaaaaatacacatttactattttgcacgagtggtattttgcttcgtcgt
cttctcagtgaccgcaatcttgatggtataacccatgttttcgttgatgagattcatgag
cgaggcatgaatgaagacttcctgttgattgtgttgaaggatcttcttccacgacgccca
gatttgagattgattttgatgagtgctactcttaatgctgaattattttccagttacttt
ggaggggctccaatgattcatatcccaggcttcacatatcctgtaagagcgcattttctg
gaagatttgctggaaataacagggtataagttgacttcgttcaaccaaattgatgattat
ggtcaggagaagatgtggaaaacacaaaaacagttagcacctcgcaaaaagaaaaatcag
ataactgctcttgttgaggatgctctaaacaaatcaaacttcgagagttatagtgcaagg
gcacgtgattcattagcatgctgggctcctgattgtattggattcaatcttattgaggca
gttttgtgccacatatgtcgaaaagaacgtccaggtgctgtactagtatttatgactggt
tgggaagatattagttgtttaagagatcagcttaaagcccatcctctcttgggagaccca
aatagagtgttgttgctcacttgtcatggttctatggcaacctctgagcagaaactcata
tttgagaaggcacctcagaatgtacgtaaaatagtacttgcaacaaacatggccgaggca
agtattactataaatgatgtagtctttgtagtggactgtggaaaagcgaaggagacaact
tatgacgcgctaaataatactccatgtttattaccttcatggatttcacaagcctctgcc
cgacaaagaaggggcagggctggccgcgtgcaaccaggcgagtgttaccatttatatcca
cgatgtgtttatgaagcttttgctgaatatcaactacctgaactcctgagaactcctttg
aattctctttgcttgcaaataaagagtttgcaggttggaagtattgctgaattcctatca
gctgctcttcagccgccagaaccattggctgtgcaaaatgctattcagtttttgaagatg
attggtgcattagatgaaaatgagtatcttacacatctaggaaagtttttagcaattctc
ccggtggatcccaagcttgggaaaatgctcattatgggtgctattttccgttgcttcgat
cctgtattgactatagtggctggtcttagtgtgcgggatccttttctattgcctcaagac
aaaaaggatttagcggggactgcaaagtctagattctcagcaaaagactatagtgaccat
atggcgcttgtccgtgcatatgaaggatggaaagatgctgaaagggaaggttctgcctac
gaatactgctggaggaatttcctctctgcccagactcttcaagctatccattctcttaga
aagcaatttatcttcatcttgaaagatgctggattgcttgatgctgatactgcaactaac
aataaactaagttacaatcagtctttggttcgtgctgtcatatgttctggcttgtatcct
ggaattgcatcggtggtgcacagagagacatcaatgtccttcaagactatggatgatgga
caagtcttgctttatgctaattcagtcaatgctcgttatcaaacgattccatacccttgg
ttggtgtttggtgaaaaagtgaaggtcaatacagtcttcatacgagattctactggagta
tctgattcgattgtgatcctatttggtagtactcttgacagcggagatacggctgggcat
ttaaagatgttgggtggatacatagagttcttcatggatcctactctagcagattgctac
ataaagctcaaagaggagcttgaaatgcttttgcaaaagaagcttcaagatcctgaggtt
gacatccacaaggaaggcaaataccttatgcttgctgttcaggaactggtttcaggagat
cagtgtgagggaaagtttgtgtttggtcgtgaaaacaagaggcctaaagattctaaagac
actgatagatttacaagggatgggacaaacccaaagagtttgctgcaaaccctaatgatg
agggcaggtcactcccctcccaagtacaaaacaaagcatctaaaaacaaatgaatttagg
gcacttgtagagttcaagggaatgcaatttgtaggtaaaccaaagagaaacaaagctctt
gcagaaaaggatgctgcaatagaggcactagcatggttaactcaaacttctgagaagaat
catgatgaagatgataaatctccgcctgatgtcaccgacaacatgctgaaacttcttggt
aaacgcaggagatcaaagcgtcgttga
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