Nicotiana tomentosiformis: 104118551
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Entry
104118551 CDS
T05025
Name
(RefSeq) ATP-dependent helicase BRM
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104118551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104118551
03036 Chromosome and associated proteins [BR:
nto03036
]
104118551
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104118551
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
104118551
Chromatin remodeling factors
BAF complex
104118551
PBAF complex
104118551
GBAF(ncBAF) complex
104118551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
QLQ
Bromodomain
HDA2-3
AAA_14
Motif
Other DBs
NCBI-GeneID:
104118551
NCBI-ProteinID:
XP_009628116
LinkDB
All DBs
Position
1:complement(49446229..49457855)
Genome browser
AA seq
2238 aa
AA seq
DB search
MQSGGGAQQGGGVAGHGRSTAASASASPSSSSSASHMGLDQQQQQQLHQHQQQQQRQSLQ
QQFLRRPEGNEAILAFQTGNAHGMLGGGNFVGPSGSMQLPQQSRRYIDLGQQHGSPTIRE
DGQNRSQGFEQQMLNPVQQAYLQYAYQAAQQKSALGMQHQQQMKMGMFGPPAKDQDPRIA
NMKELVAMQASNQAQASSSKISSEHFSRGEKQSDQGQQLMADQRTDPKLPSQPTLLGQAV
ATKPMQAPPSQQSMANMTSNSLAMAAQMQAMQALALERNVDLSLPANANIMAQLIPLMQS
RMMMAQQKVPDGNVPVQSSSGHTPKQQVSSPQIANENSPHAHSSSDVSGSSSAKTRQTVT
TGPLGVTHNIASINNSNNIVQQQFSAQGRENNLPSRQPITVSSGLPPMQYPQSSINPNQG
VDNTFPPKPASTAQETLQTQYGRQLSRPSPHSAASSPDGNLGNSLASQGGNVRQVQKQHL
GFSKQQLHVLKAQILAFRRLKKGDGTLPRELLQAIIPPPLDVQTQQTFPPGGTSNQEKSS
GKSSEDNSRRPEPSEKGPQLVVPSSDGLNGSKEEVTGDESTAASTIVVPRSATETKETAS
VVLPGKEEQPIMGHASKSDQDAEHAIQNTPSRGDIAPDRGKSVASQATGSDATQAKKPMQ
SSVTQQKDTGPARKYHGPLFDFPVFTRKHDAFGPSMMMNNNNNLTLAYEIKDLLMEEGSE
ILKRKREESIKKIGDILAVNLERKRIRPDLVLRLQIEEKKLRLADIQARMRDEIEQQQQE
IMAMPDRPYRKFVRLCERQRQDLARQVQASQRAIREKQLKSIFQWRKKLLEAHWAIRDAR
TARNRGVAKYHERMLREFSKKKDDNRNERMEALKNNDVERYREMLLEQQTNIPGDASERY
AVLSSFLSQTEEYLHKLGSKITATKNQQEVEESANAAAAAARAQGLSEEEVRSAAACARE
EVMIRNRFSEMNAPRNGSSVNKYYHLAHAVNERVIRQPSMLRAGTLRDYQLVGLQWMLSL
YNNKLNGILADEMGLGKTVQVMALIAYLMEFKQNYGPHLIIVPNAVLVNWKSEFLNWLPS
VSCIFYVGGKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK
DRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQ
KEGPTHNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCRMSAF
QSAVYDWIKSTGSLRVDPEDEERRAEKNPNYQPKTYKVLNNRCMELRKACNHPLLNYPYL
NVTKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDIVEEYLQWRRLVYRRIDG
TTSLEDRESAIVDFNSPDTDCFIFLLSIRAAGRGLNLQTADTVIIYDPDPNPKNEEQAVA
RAHRIGQKREVKVIYMEAVVDKIASHQKEDEFRAGGAVDSDDDLAGKDRYMGSIESLIRN
NIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETLHDVPSLQEVNRMIA
RSEEEVEQFDQMDEEFDWEEEMTRYDQVPKWLRATSKEVNGAIANLAKKPSKNVLFSSGT
GMDSSGAPESEKKRGRPKSKKVPIYTELDDDFSEASSEERNGYSAHEEGEIGEFEDDEFS
GAVGVTPVNKDQSEEDVPSYADRYEYHQGPQGAIKTLVPDQQVGSSGSSSDSQKPIPIVS
SSVSSQQKFGSLSALDARPGSRAKRMADELEEGEIAVSGDSHVDLQLSGSWIQDRDEGEE
EQVLQPKIKRKRSLRVRPRHAAERPEETLIEKPAVQRGDSSQMALQGDCRYDLQVRNDRG
HKAHAEPSALKHGQGDASLKSKRSIPSRKSSNSVKIHGSGKPGKVSCLSPDDSFEPTRES
WDNKASGTYSGGSKMSEVIQRKCKTVTIKLQKKIEKGGHQIIPLLHGLWNRIESSDCIGG
ADDSAFGLQTIDMRVDESEYSGVLEFVSDVQLMLKRAVQYFGFSHEVRSEARKVHDLFFD
ILKIEFPETDFREARNSISFAGPAASTTPGASSRQMPVGQNKRHKLINEMEPDPSPLQKP
KTRGALHAGEDAKAKNHTAQRETRFGGSSGRELSQQDDSRSFTHPGELVICKKKRKDREK
LGMKPGSSSAGPVSPPSVPRSIRSPGSLPTVKEGGRLNQQTPPPQNQLNGSGSNSSVGWA
NPVKRLRSDSARRRQSHL
NT seq
6717 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcagggggtggagctcagcaagggggtggtgtcgccggacatgggcggagcacg
gcggcatcagcctcagcttctccttcatcatcttcttctgcctctcatatggggttggat
cagcagcagcagcagcagttgcatcaacatcaacagcaacaacaacgccagtcattgcaa
caacagttccttagaaggcctgaaggaaatgaagctattcttgccttccagactggcaat
gcccatggaatgttaggtgggggtaattttgttggaccttctggatccatgcagctgcct
cagcagtcgaggaggtatattgatttgggtcaacaacatggttctcccaccattcgagaa
gatggccagaacaggagccagggctttgagcaacagatgctgaatcccgtccaacaggca
tacttgcagtatgcttaccaggcagcccaacaaaagtcagctcttgggatgcaacatcag
cagcaaatgaaaatgggaatgtttggccctcctgcaaaggaccaagatcctagaattgct
aatatgaaagaacttgttgccatgcaggcatcaaaccaggcccaggcatcatcatcaaag
atatcctcagaacatttctctcgtggtgagaaacaatctgatcagggccagcagttgatg
gccgatcagagaacagatccgaagcttccttcccagccaacattgcttggccaagcagta
gctacgaagcccatgcaggctccaccatctcagcaaagcatggcgaacatgacaagtaac
tctcttgctatggctgcgcagatgcaagcaatgcaggctctggcacttgaacgtaatgtt
gatctgtcactacctgcaaatgcgaacattatggcacagctaattccgctcatgcagtcc
agaatgatgatggcccagcagaaagtgcctgatggcaatgtgcctgttcaatcttcatca
ggtcatacgccaaagcagcaagtttcatcacctcaaattgcaaacgaaaactcgcctcat
gctcattcttcaagtgatgtgtcgggctcaagttctgctaaaactaggcagactgttaca
actggtcctctcggtgtgacacataacatcgcttcaattaataactcaaataatatagtc
cagcagcagttttctgctcaaggtagagagaacaatttgccttctagacaaccaattacg
gttagcagtggattgcctcccatgcaatacccacagtcatctataaacccgaaccagggt
gtggataacaccttcccacctaaacctgcctcaactgcccaagaaaccttgcagacgcag
tatggcaggcaattgagtcgaccttcaccacattctgcagcttcttctccagatgggaat
ttggggaattcccttgcatctcagggtggaaatgtccgtcaagtgcaaaaacaacatctg
gggttcagtaagcagcaactgcatgttcttaaagcccagatacttgcatttagacgtcta
aagaaaggagatgggacattaccgcgtgagttactccaagctattattccaccacctcta
gacgtgcaaacgcagcaaacgtttcctcctggtggtacatcgaatcaggagaagtcatcg
ggaaaaagctcagaagataactcaagacgcccggaaccaagtgagaagggtccccagctt
gtagtaccatcatctgatggactgaatggttcaaaggaggaggtcacaggagatgagagt
acagctgcctcaaccatagttgtgccacgtagcgcaactgagacaaaggagactgcatca
gtggttcttcctggaaaagaagagcagccaatcatgggacatgctagtaaatctgaccag
gatgctgaacatgctattcagaatactcctagtagaggtgatattgcaccagataggggt
aaatctgttgcatcacaagctactggttctgatgcaactcaggcaaaaaaacctatgcag
tctagtgtcactcaacaaaaagataccggtccagctcgcaagtatcatggaccattattc
gattttcctgtcttcactcgaaagcatgatgcttttggaccatccatgatgatgaacaac
aataataatttaacattggcttatgaaatcaaggatcttctaatggaggaaggctcagaa
attctcaagagaaaaagggaggaaagtataaagaagattggtgatatcctagctgttaat
ttagagaggaaaaggattagaccagatcttgttctaagattgcaaatagaagaaaagaaa
ctccgacttgctgatatacaggcacgcatgagggatgagattgagcaacagcagcaggaa
ataatggcaatgcctgataggccataccgaaaatttgtaaggctatgcgaacgtcagcgt
caggaccttgctaggcaagtgcaggcctcccagagagctatccgagaaaaacaattaaaa
tctatttttcaatggcgtaagaagcttcttgaggctcattgggcaatacgtgatgctcga
actgcacgcaataggggagtggctaagtaccatgagagaatgttgagggagttctcaaag
aaaaaggatgataatcggaatgaaagaatggaggcattgaagaataatgatgttgagaga
tacagggagatgttgctagagcagcagaccaacattcccggtgatgcttcagagagatat
gctgttctctcatcatttttgagtcagacagaagagtatcttcataaattgggaagtaaa
attacagcgacaaaaaatcaacaggaggttgaggagtctgcaaatgctgctgcagctgct
gcacgagcacagggcctctctgaagaagaagtaagatctgcggcagcctgtgctcgggag
gaagtcatgataaggaatcgtttctctgaaatgaatgcacccagaaatggttcatcagtt
aacaagtattaccatcttgcccatgctgtgaatgaaagggttattaggcagccttctatg
ttacgagctggaactttgcgagactatcagctggtggggttgcagtggatgctttctttg
tataataataagctaaatggtattttggctgatgagatgggtctggggaagactgtgcag
gttatggcattaattgcttacttgatggaattcaaacaaaactatggaccacatcttata
attgtgccaaatgcagttctagttaattggaagagtgagtttctcaattggcttccatct
gtgtcctgcatcttctatgttggtgggaaggatcaaagatccaagttattttcacaggaa
gtttgtgcgatgaaatttaatgttctcgtcactacatacgagttcatcatgtatgatcgt
tctaaactttcaaaagtcgattggaagtatataataattgatgaagcacaacgtatgaag
gacagagaatcagttcttgctcgtgatcttgacagatatcgatgccaaaggcgtttgctt
ctcacggggacaccattgcagaatgatttgaaggaactatggtcacttctaaatctactg
cttccagaagtatttgataatcgcaaagcatttcatgattggttctccaagccgtttcaa
aaagaaggtccgacacacaatgctgaggatgactggcttgagactgagaagaaggtcatt
attatccatcgacttcaccaaattctcgagcctttcatgctcaggcgtcgtgttgaagat
gttgaaggttcacttccacccaaggtctcagttgtcttaagatgcaggatgtcagctttt
cagagtgctgtttacgactggatcaagtctactggttcacttagagttgaccctgaagat
gaggagcgaagggctgaaaaaaatccaaattaccagcctaaaacatataaagttttaaat
aatagatgtatggagcttcgaaaagcttgcaaccatcctttgcttaactatccatatctc
aatgttacaaaggactttcttgttaaatcatgtggtaaattgtggattcttgatcggatc
ttaattaaacttcaaagaacagggcacagggtgctgcttttcagtaccatgacaaagctg
cttgatatcgtggaggagtatttgcagtggcgacgactcgtctacagaagaattgacggg
acaacgagcttagaggatcgtgaatcagctattgtggattttaatagtccagatactgat
tgctttatcttcttgctaagcattcgtgctgctgggcgtggattgaatcttcagactgct
gacactgtgatcatctatgatcctgatccaaaccccaaaaatgaggaacaggcagttgct
agagcccatcgtataggacagaaaagagaagtgaaagtcatatacatggaggcagttgtt
gacaaaattgcaagtcatcagaaagaggatgaattccgtgctggaggtgcagttgattct
gatgatgacctcgcaggcaaggaccggtatatgggatctattgagagtctcattcggaat
aatattcaacagtataagattgacatggctgatgaagttataaatgctgggcgttttgac
caaaggactacacatgaagagcggcgtttgactttagaaacgttattacatgacgaggag
agatatcaagagacacttcatgatgttccctctcttcaggaggtaaatcgcatgattgct
aggagtgaagaagaggtagaacaatttgatcaaatggatgaagaatttgattgggaagag
gagatgactagatatgaccaggttccaaagtggcttcgtgctaccagtaaggaagttaat
ggggccattgccaatttagcaaaaaagccctcaaagaatgtcttatttagtagtggtact
ggcatggactccagtggagctcctgaatctgagaagaaaagggggcgccccaaaagtaag
aaggttcctatttacacagaattggacgatgacttctctgaagcaagctctgaggagagg
aatggatattcagcccatgaagaaggagaaattggggaattcgaagatgatgaatttagt
ggtgctgttggtgttacaccagttaacaaagaccaatcagaagaagatgttccaagttat
gctgatagatatgaataccaccaaggtccacaaggtgctataaagactcttgtacctgat
caacaagtgggttcatcaggatcatcttcagacagccaaaaaccgataccaatagtatcc
tcgtctgtgtcatctcagcagaagtttggatccctttcagcattagatgccaggcccggt
tctcgggccaaacggatggcagatgaattagaggaaggagaaattgcagtatctggagac
tcacatgtggatctccagctgtctggtagttggatccaagatcgtgatgaaggcgaagaa
gaacaggtgttgcagcccaaaataaaaaggaaacgcagtttgagggttcgaccaaggcat
gctgcagaaaggccagaagagacgctcattgagaagccagctgtgcagcgtggagattct
tctcagatggcacttcaaggggattgtagatatgatcttcaagtgagaaatgatcgtgga
cacaaagcgcatgcagagcctagtgctttaaagcatggtcaaggtgatgcatccttgaag
agtaagcgaagcataccctcgaggaaatcttctaattcagtgaagattcatggttcagga
aaacctggaaaagtcagttgcttgtctcctgatgattcctttgaacccacaagagaaagt
tgggataataaggccagcgggacttatagtggagggagtaagatgtctgaggtcattcaa
agaaagtgcaagactgtcactatcaagctccaaaagaaaatagagaagggtggccatcaa
ataattccactgctacatggtctgtggaacagaattgaaagttctgattgcataggtggg
gctgacgatagtgcatttggtttacagacaattgatatgcgtgttgatgagtctgagtac
agtggagtgctcgaatttgtgtctgatgtgcagctgatgttaaaacgcgcagtgcaatac
tttggtttctcgcatgaggtgagatctgaagcaaggaaagtgcatgatcttttctttgac
atcttgaagatagaatttccagagaccgactttcgagaagcaaggaattctatctctttt
gctggacctgcagctagtactacacccggcgcatcttcaaggcagatgcctgtaggtcag
aacaagagacataaactgataaatgaaatggaacctgaccctagcccgctacagaaacca
aagacacgtggagcactccatgccggtgaagatgccaaggctaagaatcatacggctcaa
agagaaacaagatttggtggtagcagcggccgggagcttagccaacaggatgattcgcgc
tcgttcactcatccgggggagcttgttatttgcaagaagaagagaaaagatagagagaag
ttgggtatgaaacctgggagtagttctgctggtcctgtctcaccacctagtgtcccccgc
agtatcagaagtccaggctcgctcccaactgtgaaggaggggggaaggttaaaccagcag
acaccaccaccccaaaatcagttgaatggcagtggtagcaacagctctgttggctgggca
aaccctgtgaagaggctgagatcagattctgcaagaaggcggcaaagtcatttatga
DBGET
integrated database retrieval system
