Nicotiana tomentosiformis: 104118603
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Entry
104118603 CDS
T05025
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104118603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104118603
03009 Ribosome biogenesis [BR:
nto03009
]
104118603
04131 Membrane trafficking [BR:
nto04131
]
104118603
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nto04147
]
104118603
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
104118603
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
104118603
Membrane trafficking [BR:
nto04131
]
SNARE
SNARE associated proteins
Others
104118603
Autophagy
Aggrephagy
Other aggrephagy associated proteins
104118603
Exosome [BR:
nto04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
104118603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
AAA_28
Mg_chelatase
AAA_18
Parvo_NS1
ATPase_2
IstB_IS21
ABC_tran
Viral_helicase1
NACHT
AAA_7
NB-ARC
TsaE
AAA_24
DUF815
Vps4_C
AAA_lid_PRS2_C
Zeta_toxin
Zot
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
104118603
NCBI-ProteinID:
XP_009628175
LinkDB
All DBs
Position
2:19949594..19955123
Genome browser
AA seq
808 aa
AA seq
DB search
MTNKAESSDSKGTKRDYSTAILERKKSPNRLVVDEAINDDNSVVALHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVSREDENRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEEVDLERIGKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPLSKDIDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSEN
PEAMEEDVDDEVAEIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFSE
TSTAGGTTGTADPFATSAGGADEDDLYS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgactaacaaagctgaatcctccgattcgaaagggacaaagcgggactatagtacggcg
atattggagaggaagaagtcgccgaatcggcttgttgttgatgaggcaatcaacgatgac
aattctgttgttgctcttcaccctgatactatggagaagcttcagctttttcgtggtgac
actatcttgatcaagggtaagaagagaaaagatacaatctgcatagctcttgctgatgac
acctgtgatgagccgaagatcaggatgaacaaggttgtcagaaataacctaagggttcga
cttggtgatgttgtctctgtgcatcagtgtcctgatgtcaagtatggcaaacgtgtacac
attcttcccattgatgataccattgaaggggtcactgggaacctctttgatgcttactta
aaaccctatttccttgaagcatacagaccggtgaggaagggtgatcttttcttggtaagg
ggagggatgagaagtgtagagttcaaggttattgagactgatcctcctgaatactgtgtt
gtagcccctgatacggagatattttgtgagggtgaacctgtaagtagggaagacgagaat
aggctagatgaaatcggttatgatgatgttgggggtgtgcgtaaacaaatggctcaaata
cgggagcttgttgagcttccactaaggcacccacaactcttcaaatctattggtgtcaaa
cctcctaaaggaattctgttgtatggacctcctggatcaggaaagactttaatagcccga
gcagttgcaaatgagactggtgcgttcttcttctgtattaatggtccagagatcatgtca
aaattggctggagaaagtgaaagcaatcttaggaaggcatttgaggaagctgaaaagaat
gcaccatcaatcatttttatcgacgaaattgactcaatagctcctaaacgtgagaagaca
catggagaggttgagaggaggattgtctcccagcttttgacattgatggatggactcaaa
tcacgtgcccatgtaattgttatgggtgccactaatcgccccaacagcattgaccctgcc
ctaagaaggtttggtagatttgatagggaaatagacattggtgttccagatgaagtgggg
cgtctcgaggtgcttcgtatccatacgaagaacatgaagcttgctgaagaagttgattta
gaaagaattggcaaggacacacatggttatgtcggtgctgatttagcagctttgtgtacc
gaggctgctcttcaatgcatcagagagaagatggacgtgattgatttggaggatgagacc
attgatgcagagatactgaactctatggctgtgacaaatgagcacttccaaactgctctt
ggaacgagcaatccctctgccttgcgtgaaactgttgttgaagttcccaatgtttcctgg
gaggatattggaggccttgagaatgtcaagcgtgagctccaagagactgttcaatatcca
gtggaacatcctgagaaattcgagaagtttggtatgtctccgtcaaagggagtcctgttc
tacggcccacctggatgtgggaaaactttgctcgcgaaggccattgcaaatgaatgccag
gccaacttcatcagtgttaagggtccagaattgctcaccatgtggtttggagagagtgaa
gccaatgttagagaaatatttgacaaggctcgacagtctgctccatgtgtcctattcttt
gatgaactggattccatcgccacacagagaggaagtagtgtgggagatgctgggggagct
gctgatagggtattgaatcaactccttactgaaatggatggaatgaatgctaagaagact
gtattcattattggtgcaaccaacaggcctgacattattgatcctgcacttctacggcct
ggtcgtcttgatcaattgatttatattcctctccctgatgaagactctcgtcaccaaatt
ttcaaggcgtgtctaagaaagtcacccctctctaaggatatcgatttaagagctctagcg
aagtacacacagggcttcagtggagctgacattacagaaatctgtcaacgtgcttgcaaa
tacgctatcagagaaaacattgagaaagacattgagagggagaaaaggagaagcgagaat
cctgaggccatggaggaagacgttgatgatgaggtagccgagatcaagcctgctcatttt
gaggaatcaatgaagtatgctaggaggagtgttagtgacgcagatattcgcaagtaccag
gcttttgctcagacgttgcagcagtctagaggttttggtactgaattccgattctcagag
acaagcacggcaggagggacaactggaactgctgaccccttcgcaacttcagctggtgga
gcagatgaagatgacctgtatagttag
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