Nicotiana tomentosiformis: 104118826
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Entry
104118826 CDS
T05025
Name
(RefSeq) THO complex subunit 4A-like isoform X1
KO
K12881
THO complex subunit 4
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03013
Nucleocytoplasmic transport
nto03015
mRNA surveillance pathway
nto03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104118826
09122 Translation
03013 Nucleocytoplasmic transport
104118826
03015 mRNA surveillance pathway
104118826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104118826
03041 Spliceosome [BR:
nto03041
]
104118826
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104118826
TREX complex
104118826
Spliceosome [BR:
nto03041
]
Complex C
Other components
EJC/TREX
104118826
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104118826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
104118826
NCBI-ProteinID:
XP_009628483
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All DBs
Position
2:29942928..29953634
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AA seq
249 aa
AA seq
DB search
MSNLDVSLDDLIKRNKSSSSRNPRPRTSGSGSGSGSRGPGPRRRFPNRTANRPAPYSSGP
VHAPESTWDHDMFAEHAPAYPAARGAGGISGIETGIKLLISNLDYGVSNEDIKELFSEAG
DIKRYSIHYDKSGRSKGTAEVIFARRRDAEAAIKKYNNVQLDGKPMKIEFAGPNIGAPAL
PPIRNRLYRNPNPAPRSQQRGGGFRRPPRGGRGSMRKEGGRGRGRGENISAEDLDADLEK
YHSEAMETN
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatctcgatgtatccctcgacgatttaatcaaaaggaacaaaagttccagcagt
cggaaccctagaccaagaacatctggatctggatccggatccggatccagaggccccggt
ccaaggcgtcgcttccctaaccgtaccgccaaccgtcccgctccatattcctccggaccg
gttcacgcaccggagagtacgtgggaccacgacatgtttgcagagcatgccccggcgtat
ccagctgcccgtggggccggtgggatatcggggattgagaccggtatcaagctcctcatt
tcaaacttggattatggggtttcaaatgaagatatcaaggagcttttctcagaagctggt
gatataaagcgttactcaattcattatgacaaaagtggaagatcaaagggaactgcggaa
gtaatctttgcacgtcgaagggatgcagaggcagctatcaagaaatacaacaatgttcag
ctagatggaaagcccatgaaaattgagtttgcaggaccaaacattggtgctcctgctctt
cctccaattagaaatcgtctgtacagaaatccaaatcctgctccaagaagtcaacaaaga
gggggtggatttagacgtcctcctcgaggtggtagagggagcatgagaaaggagggtgga
aggggcagaggtcgtggtgagaacatttctgcagaagatcttgatgccgacttggaaaag
tatcattcagaagcaatggagacgaactga
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integrated database retrieval system
