Nicotiana tomentosiformis: 104118972
Help
Entry
104118972 CDS
T05025
Name
(RefSeq) vacuolar protein sorting-associated protein 53 A isoform X1
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nto04131
]
104118972
Membrane trafficking [BR:
nto04131
]
Protein recycling
Others
EARP complex
104118972
Endosome - Golgi transport
Tethering complex
GARP complex
104118972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
COG4_N
Vps54_N
COG7
RINT1_TIP1
COG5_N
Syndetin_C
XhlA
MPH2
PTHB1_hp
HemX
Motif
Other DBs
NCBI-GeneID:
104118972
NCBI-ProteinID:
XP_009628652
LinkDB
All DBs
Position
5:93381160..93409256
Genome browser
AA seq
827 aa
AA seq
DB search
MATSDKQNTLDYINQMFPTEASLSGVEPLMQKIHSEIRRVDTEILTAVRQQSNSGTKARE
DLAAATSAVQELMNKIREIKTKAEQSETMVQEICRDIKKLDFAKKHITTTITALHRLTML
VSAVEQLQVMASKRHYKEAAAQLEAVNQLCSHFEAYRDIPKITELREKFKSIKQVLKSHV
FSDFSSLGTGKETEESNLLQQLSDACLVVDALEPSVREELVKSFCNRELTSYQQIFEGAE
LAKLDKTERRYAWIKRRLRTNEEIWKIFPRSWHVDYLLCIQFCKLTRSQLVEILVSMKEK
PDVATLLMALQRTLEFEEELAEKFGGGTRSKDAVDDSEETERSGNKSQTVSDIRKKYEKK
LAAHDGSQHGEQDGQKDTSVPGAGFNFRGIISSCFEPHLSVYVELEEKTLMDSLEKEILE
ETWEIEEGSQTNILSSSIKVFVIIRRSLKRCSALTKNQTLFNLFKAFQKVLKAYATKLFS
RLPKGGTGIVAAATGIEGQIKTSDKDERVICYIVNTAEYCHKTCGELADNVSKMIDAQFA
DRVDMSEVQDEFSAVITKSLITLVHGIETKFDSEMAAMTRVPWSTLESVGDQSEYVNDIN
SILTSSIPVLGSLLSPIYFQFFLDKLASSLSPRFFHNIFKCKQISETGAQQMLLDTQAVK
TILLEIPSLGKQTAGAASYSKFVSREMSKAEALLKVILSPIDSVADTYCALLPEGTLAEF
QRLLELKGLKKADQQSILDDFNKRGSGISQSTIMAPSVVPSAPNTSIAPAITNVPSSPGA
IISREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNG
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggcaacatccgataagcagaacacgttggattacatcaaccagatgtttcccactgaa
gcatctctatctggcgttgagccccttatgcagaagatacatagtgaaattcgtcgtgtt
gatactgaaatactgactgctgttcggcaacagagtaattctggaaccaaagccagagaa
gatcttgctgcagctacgagtgctgtgcaggaactcatgaataagattcgagaaattaaa
accaaagcagagcaaagtgaaacaatggttcaagaaatatgtcgcgatattaaaaaattg
gattttgcaaagaagcacataacaaccacgattactgcccttcaccgccttaccatgcta
gtttctgcggtagagcaacttcaagtaatggcatcaaaacgtcactataaagaggcagct
gcacagcttgaggctgtaaaccagctatgtagtcattttgaagcctatagggatattcct
aaaattacagaacttagagaaaagtttaagagcatcaaacaagtcctcaagtcacatgta
ttctctgatttctccagcttaggcacagggaaggagacagaagaaagtaatctactacag
cagttatcagatgcatgcttagttgttgatgctctcgaaccttctgttagagaagaattg
gtgaaaagtttttgtaatagagagcttacctcgtaccagcagatttttgaaggagcagaa
ctagctaagttggacaagactgaaagaagatatgcttggatcaagcgtcgtctaagaaca
aatgaggagatttggaaaattttccctcgttcatggcatgtcgattatttgctttgtatc
cagttctgcaagttgacaaggtctcaacttgtggaaatccttgttagtatgaaagaaaag
ccagatgttgcgaccttgttgatggctctgcagcgtactttggaatttgaagaggagtta
gcagagaaatttggtggtgggacccgcagtaaagatgctgtagatgacagtgaagaaaca
gaaaggagcggaaacaagagccagacagtttcagacattcggaaaaagtatgagaaaaag
cttgctgctcatgatggtagtcaacatggcgaacaagatggacaaaaagatacatcggtg
ccgggagctgggttcaatttccgagggatcatttcatcgtgctttgaacctcacttgtca
gtttatgtagagctggaagagaagactcttatggacagtttggagaaagaaatactggaa
gagacatgggaaattgaggagggaagtcagactaatattttatctagcagcattaaggtc
tttgtaatcatcaggaggagcttgaagcgatgcagtgctttgacgaaaaaccagacattg
tttaatctctttaaggcatttcaaaaagttcttaaagcttatgctaccaagcttttctct
agattgccaaagggtggtacaggaattgttgcagctgccacaggtattgaaggacagata
aagacatcggacaaggatgaaagggtgatctgctacatagtaaatactgcagagtattgt
cacaaaacgtgtggtgaattagcagataatgtctcaaagatgattgatgctcaatttgca
gatagagtggatatgtctgaagtacaggatgaattttcagcagttattacaaaatcattg
attacactagtgcacggaatagaaacaaagtttgactctgagatggctgcaatgactcgt
gttccatggagtactctcgaaagtgttggtgatcagtccgagtacgtcaatgacataaat
tcgatccttaccagtagcattcctgtgctcggaagccttctctctcccatttacttccaa
ttctttttggataagcttgcgtcgtctctcagtccacggttctttcacaatatattcaaa
tgcaaacagatatcagagactggagcacagcaaatgcttttggatacgcaagcagtaaag
actattttgctggaaattccttctcttggaaaacaaacagcaggagctgctagctattct
aaatttgtcagtcgtgagatgagcaaagcagaagcattattgaaggtcatactatctcca
atagattctgtggcagatacatactgtgcactgctgccagagggaacacttgcagagttt
cagcggcttttggagcttaagggcctgaaaaaggctgatcagcagagcatactggatgac
ttcaacaaacgtgggtcaggtatctctcagtcgaccattatggccccttcagttgtacca
tctgctccaaacacctcaatagcaccggccataactaacgtaccatcatcacctggggcc
atcatttcaagagaagatgtgctgaccagagcagctgcacttggaagaggtgcagctact
actggctttaagagattcctcgctttaacagaagctgcaaaagatcgcaaggatggacca
ttcaggaagctattcaatggataa
DBGET
integrated database retrieval system
