Nicotiana tomentosiformis: 104119443
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Entry
104119443 CDS
T05025
Name
(RefSeq) DNA mismatch repair protein MSH7 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104119443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nto03400
]
104119443
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104119443
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
104119443
NCBI-ProteinID:
XP_009629253
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All DBs
Position
11:41762920..41789133
Genome browser
AA seq
1086 aa
AA seq
DB search
MQRQKSILSFLKRPSSEDQSSGNNKLKFPNQNTVPVTKNIPILGTETPPEKLPRQVLPFN
CGHDGNKSSAFSSIRHKFIREKPRIDRDLVKNDSFGIPSPCTKNEGSERLGNPSISLQSG
SNRSSVSANRNRNQEGKGSVSLIQGDDHGFGPETPSMQPFVPGLKRVQDDMRNSADRSDC
SSLNASKRIKSLEGSNFGGKNLEAEFEMTSKFEWLHPSQIKDANGRMPGDPLYDKRTLFI
PPDALRKMSASQKQYWDVKCKYMDILLFFKVGKFYELYELDAEIGHKELDWKMTLSGVGK
CRQVGISESGIDEAVQKLLARGYKVGRMEQLETSEQAKSRGSTSVIRRKLVHVFTPSTTS
EGNIGPDAVHLLAVKETCNELENGSTTFGFAFVDCAALKVWVGSISDDASCAALGALLMQ
VSPKEVIYDARGLSKDAQKALKKYSLTGSAAPLLSPFQPGADFVDPAEVKNFLDLKGYFK
GSCNKWDHTFDGVRSHDVALCALGSLVNHLERLMLDEVLRNGDILSYEVYRGCLKMDGQT
LVNLEIFNNNADGSPSGTLYKYLDNCVTSPGKRLLRNWVCHPLKDVEKINHRLDVIDRFV
ENSEATLSAAQYLRKLPDLDRLVGRVKASIQSSEALLLPLIGAKILKQRVKVFGLLVKGL
RIGLDLLRLLQKERLTSSLAKVVSLPVLDGDDGLDKFLSQFEAAIKSDFPNFQDHNATDF
DAETLSILLELFVEKATEWSQVIYAISCVDVLRSFSITAKFSSGVMCRPVILPLSKPTNF
CRETGGPILNIKGLWHPYALAESGGLPVPNDLHLGGNTNICHPRTLLLTGPNMGGKSTLL
RATCLAVIMAQLGCYVPGEICVLSLVDIIFTRLGATDRIMTGESTFFIECTETASVLQNA
TRNSLVLLDELGRGTSTFDGYAIAYAVFRHLIETVNCRLLFATHYHPLTKEFASHPNVTL
QHMACSFKLKSQSSSPTEQELVFLYRLASGACPESYGMQVALMAGIPKIVVESASNAGQV
MKKMMGESFRSCEQRACFSTLHEEWFKTLLEISKTDGEVNDDLFDTLYCLWHELKLIDPL
AEDVSL
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggcagaaatctatactctccttcctcaagagaccttcatcggaggaccaaagc
tccggcaacaacaaactcaaatttccaaatcaaaatacagtccctgttaccaaaaatatt
ccgattttgggaactgaaactcctcctgagaagttgccacgtcaggttctccccttcaac
tgtggccatgatggaaataagtcttctgctttctcttctattaggcacaagtttatcaga
gaaaaaccacgcattgatcgggatctagtgaagaatgattcttttgggatcccctctcct
tgtacaaaaaatgaaggatcagaaagactggggaatccttctatttccttgcagtcaggc
tctaatagaagttctgttagtgctaatagaaataggaaccaagagggtaaaggatcagta
tctcttatacaaggtgatgatcatggttttgggccggaaacaccaagtatgcagcctttt
gtacctgggttaaaaagagttcaagatgacatgcgtaactcagcggataggagtgattgc
tcttcattgaatgcaagcaagaggattaagagtcttgagggttcgaattttggagggaag
aaccttgaagcagagtttgaaatgactagcaagtttgagtggcttcatccatctcaaatc
aaggatgcgaatggtagaatgccaggggacccactctatgacaagcgaacactgtttatt
cctcctgatgcattgagaaaaatgtctgcttctcagaagcagtattgggatgtcaaatgc
aaatacatggacattctgcttttctttaaagtgggaaaattttatgagctgtatgagcta
gatgctgaaattggtcacaaggagctcgattggaaaatgacactaagtggcgtgggaaaa
tgtagacaggttggcatatctgaaagtgggatagatgaagctgttcagaagctcctagca
cgagggtacaaagtaggacggatggaacagttggaaacatctgagcaagcaaaatctaga
ggctctacttctgttattcgcagaaaactagttcatgtattcactccttctaccacaagt
gagggcaatattgggcctgatgcagttcatcttcttgcagttaaggagacttgcaatgag
ctagagaatggttcaaccacttttggctttgcttttgtcgattgtgctgctctgaaagtt
tgggttggttccataagcgatgatgcatcttgtgcagctttgggggctttgctgatgcag
gtgtcaccgaaggaagttatatacgatgctaggggtttgtcaaaggatgctcaaaaagct
ctgaaaaaatactcattaacaggttctgcagcaccactcctgtccccattccagccaggt
gctgattttgttgatcctgcagaagtgaaaaatttccttgacttgaaaggttactttaaa
ggatcttgtaataagtgggatcacacctttgatggagtaaggagccatgatgttgcgtta
tgtgctcttgggagtcttgtcaatcatttagagcgattgatgttagatgaggtcttacgt
aatggcgatattctatcatatgaagtctataggggttgcctcaaaatggatggacaaaca
cttgtcaatcttgagatcttcaacaataatgccgatgggagtccatcaggtactttatac
aagtatcttgacaattgtgttacttcacctgggaagcgacttttgagaaactgggtttgt
catcccctcaaagatgtggagaaaatcaaccataggcttgatgtgattgacagatttgtt
gaaaattcagaggctacattatccgctgctcaatatcttcgcaagcttccagatttggat
aggttggttggacgggttaaggctagcattcaatcttctgaagcactcctactgcccttg
attggtgccaaaatattgaagcagcgagttaaagtgtttgggttgcttgttaaagggcta
cggattgggctagatttgttaaggttgttgcagaaggaacgtctgacctcttccctggct
aaagtggtatccttgcctgttctagatggtgacgatgggcttgataaattcctcagccaa
tttgaagcagcaatcaagagtgacttccccaattttcaggatcataatgctactgatttt
gatgctgaaacgctatccattttgctcgagttatttgttgagaaggctactgagtggtct
caagtcatttatgccataagttgtgttgatgtgttaagatcattttccattactgcaaaa
ttttcctctggagttatgtgtagaccagtgatcttgcctctttcaaagccaacaaatttc
tgtagagagactggtgggccaatactaaacatcaaggggctttggcatccatatgctctt
gctgaaagtgggggactgcctgttcctaatgatctccatcttggagggaatacgaatatc
tgccatcctcgtactttactgttgactggaccaaatatgggaggaaagtcaactctttta
cgtgccacttgtctggccgtcataatggctcagttgggttgctatgtgcctggagaaata
tgtgtgctttcacttgtggacatcatctttacacgtcttggagcaactgatcgaatcatg
actggtgaaagtaccttctttattgagtgcaccgaaaccgcgtcagttcttcaaaatgct
acacgcaattcccttgttcttctggatgaattgggcagaggaacaagcacttttgatgga
tatgctattgcatatgctgtattccgacaccttatagagacggtgaactgccgcttactg
tttgccacacattatcatccactcactaaagagtttgcttctcatcctaatgtgacatta
caacacatggcctgctctttcaagttgaaatctcaaagttcatctccaacagaacaagag
ctggtgttcctttaccgtctagcctctggagcatgcccagagagctatggaatgcaagta
gcactcatggctggaatcccaaaaattgtggttgaatccgcatcgaatgcagggcaagtc
atgaagaaaatgatgggagaaagttttaggtcatgtgaacaaagagcttgcttttcaaca
ctgcatgaagaatggttcaagacacttctagaaatctcaaagacagatggtgaagttaac
gatgacctatttgatacattgtattgcttgtggcatgaactaaagctgatagatccacta
gctgaagatgttagtctctga
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