Nicotiana tomentosiformis: 104120089
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Entry
104120089 CDS
T05025
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nto03036
]
104120089
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
104120089
REST complex
104120089
Heterochromatin formation proteins
Other heterochromatin formation proteins
104120089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
104120089
NCBI-ProteinID:
XP_009630074
LinkDB
All DBs
Position
2:93892969..93902999
Genome browser
AA seq
1350 aa
AA seq
DB search
MKRLREDGYGNPQFKRPFGSSRGESYGQSQVPGSGLGGGAGGNSTGGGGAGASASTQKLT
TNDALSYLKEVKEMFQDQKDKYDLFLDVMKDFKAQRIDTAGVIARVKDLFKGHPRLILGF
NTFLPKGYEITLNEEDEAPPKRTVEFEEAISFVNKIKKRFQNDDHVYKSFLDILNMYRKE
HKGISEVYHEVAILFVDHPDLLDEFTRFLPDTSATASAAQTSFGRSPFHRYDERSSAIPM
LRQPHMDKRFRRDRIIGPHAERDLSIERPDMDDDKTMVKLQKEHKRRAEKESRDRRTHDQ
DYKEPDNENNGDLNMQRHTDKKKSARKVEEFEGSHEDKDALKNMYSQEFTFCEKVKERLR
SPADYQAFLHCLSIYSTEIINRKELLRLVADLLGKYPDLMEGFNEFLERCERVDGFLAGV
VSKGKWAEGHTSRSVKEDEKDKEQKRETDGTKEKDRYKEKYWGKSIQELDLSNCERCTPS
YRLLPDDYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRF
ELDMLLESVSSTAKRAEELLNAINDNSIGGDGPIHIEDHFTVLNLRCIERLYGDHGLDVM
DILRKNPSLALPVVLTRLKQKQEEWTKCRTDFNKVWAEIYAKNHYKSLDHRSFYFKQQDS
KNLSSKSLVAEIKEIKEKKQKEDDMIVSISAGSRHPLTPNLEFDYADSELHEDLYKLIKY
SCEEVCSSEEQLNKVLRLWTNFLEPILGIPCRPYDSEATENNDVLSKQHGPKSNGTSVGE
GDGSPSSDAKQSKVISNRDANASPLRVNSSRTSFANADALPKKDGLAVIGEDLTNSDAAA
AMGADAVHEKVELTSGRGARRGTGVSEHGQVSKSNIDSVPASETDTSRSTPLGNGGFAEG
SRSNGYNDDSVDPCKNEKEEGELSPNGEFEEDNFVGFQDGASRNGSVHYQSRAAEEMDCQ
DAAGQNDADADDEDSENVSEAREDVSGSESAADDCSREEHDEEDDGEHDELDGKAESEGE
AEGTSEAHYVTGDGNVLQMSDRLLLTSKPLTKYVASPVYGGAMKYSRVFYGNEAFYVLFR
LHQILYERLLSAKLNSASSESKWRTGKDTGTDPYDRFMSALYSLLDGSADNSKFEDDCRS
IIGNQSYVLFTLDKLIYKLVKQLQTVSSDELDGKLLQLYEYERLRKPEKFVDTAYYENAH
VLLHEESIYRFECTSSPTRLSIQLMDGGSDKSEVVAVAVDPKFSGYLHNDYLSVEHGKKE
SSAVLLKRNKRKHANHDESTAFCMAMEHVILVNGLECKMASNSSKISYVLDTEDFFFRRG
RKLKKVSAGRLSCHYQTRVEQFHRVLLSSS
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgattaagagaggatggatatggtaaccctcaatttaagcggccatttggttct
tctcgtggagaatcctatggtcaatcacaagttcctggaagtggtttgggcggaggagca
ggtggcaacagcacaggcggaggtggagcaggtgctagtgctagcacccaaaagttgaca
actaatgatgcgttgtcttatttgaaggaggtcaaggagatgtttcaagatcaaaaggat
aagtacgacttgttccttgatgttatgaaagactttaaggctcaaagaattgatactgcg
ggtgtcatagcaagagtgaaagacttgtttaaagggcatcctagattgatccttgggttc
aacactttcttgcccaagggctatgaaataacccttaatgaagaagatgaggctcctcca
aagagaacggttgagtttgaagaagctatcagctttgtgaacaaaataaagaaacgtttc
caaaatgatgatcatgtgtacaagtccttcttagacattttgaacatgtacaggaaggag
cacaagggcatcagcgaggtgtaccatgaggttgccatacttttcgtggaccatccagat
ttgctagatgaattcactagattcttgccagatacttcagctactgcatcagcagcacaa
acttcatttggcaggtctcctttccatcgttatgatgagaggagctcagctattcccatg
cttaggcaaccccacatggacaagcgtttccggcgggataggattattggtcctcatgca
gaaagagacctaagcattgagcggcctgatatggacgatgataaaacaatggtgaagttg
cagaaagaacataagagacgtgctgaaaaagagagcagggacagaagaactcatgatcag
gattataaagaacctgataatgagaacaatggagatctaaacatgcagcgtcatactgat
aaaaagaaatctgctcggaaggttgaagaatttgaaggatctcatgaagataaagatgcc
ctgaaaaatatgtatagccaagagttcactttctgtgaaaaggtaaaggaaagactgcga
agtccagctgattatcaggcattcttacattgcctctccatttatagcacagaaataatt
aacaggaaagagttattacgtttggttgctgatctacttggaaaatatcctgatcttatg
gagggtttcaatgaatttctagagcgttgtgaacgagttgatggatttcttgctggtgtt
gtgagcaaaggtaagtgggctgaagggcatacttccaggtcagtaaaggaagatgagaaa
gacaaagagcagaagcgtgaaactgatggaacaaaagaaaaggaccgatataaggagaaa
tactggggaaaatccattcaagaactcgacctgtcaaactgcgaacgatgcacacccagt
tatcggcttcttcctgacgattatcccatacctaccgcaagtcaaagatcagagcttgga
gctcaggttttaaatgatcattgggtatctgtgacttctgggagtgaggactactctttc
aagcacatgcgcagaaatcagtatgaagaaagcctgtttcgttgtgaagatgataggttt
gagctagacatgttactggagtcggtaagttcaactgctaagcgtgcagaagagttgctg
aatgccattaatgataattcaattggcggggatggtccaatccatattgaggaccacttt
acagtcttaaacttaagatgcattgaacgactctatggtgatcatggtctggatgttatg
gatattctgcgtaaaaacccatctcttgcgctgcctgttgtactgacccgcttgaagcag
aaacaggaggagtggaccaagtgtcgcacagattttaacaaagtttgggctgaaatctat
gctaagaaccattataagtcacttgaccatcgaagcttctatttcaagcaacaagattca
aagaatcttagctcaaaatccttagtggcggagatcaaagaaattaaggagaaaaagcag
aaagaagacgacatgattgtttctatttctgctggaagtagacatcctttaaccccgaat
cttgaatttgattatgctgactctgagcttcatgaagacttgtacaaacttatcaagtat
tcatgtgaagaggtttgctcctccgaagagcaattaaataaagtactgaggttatggacc
aactttcttgagccaattttgggtataccttgtcgcccttatgactcagaggccactgag
aacaatgatgtcttatctaagcagcatggtccaaaaagcaatggaactagcgttggtgaa
ggtgatggaagtcctagttcagatgctaagcaatcaaaagttatcagcaacagagatgcc
aatgcttcccccctacgagtaaactcttctaggacaagctttgcaaatgcagatgctctt
cccaaaaaagatggtttggcagtgattggtgaagacctaactaattctgatgcagctgct
gctatgggagcagatgctgttcatgaaaaagtggaattaacttcaggacgtggcgcaaga
cggggtactggtgtttcagagcatggtcaagtatccaagtctaacattgatagtgtgcca
gcatcagagactgatacttcaagatcgactccgctgggcaatggagggtttgcagaaggc
tctagaagtaatgggtacaatgacgattcagttgatccctgcaaaaatgagaaagaagag
ggtgagttatcaccgaatggtgaatttgaggaggacaactttgttgggtttcaagatggt
gcctcacgtaatggaagtgtgcattatcaatccagagctgctgaagagatggattgtcag
gatgctgctggtcaaaatgatgcagatgctgatgatgaagatagtgaaaatgtttctgag
gccagagaagatgtatctggcagtgagtctgctgctgatgactgctctcgagaagagcat
gatgaagaagatgacggggaacatgatgaacttgatggcaaagctgagagtgaaggtgag
gctgaggggacgagcgaagcacactatgttacaggtgatggcaatgtgttgcaaatgtct
gatcggcttttgcttacttcgaagccacttacaaaatatgtggcttcacctgtatatggg
ggagcgatgaagtactcgcgggtgttttatggaaatgaggcattctatgtgctttttagg
cttcaccagattctatatgaaaggttattatcagcaaagctgaattcagcatcatctgag
tcaaaatggagaactggaaaggatactggtactgatccctatgacagattcatgagtgcg
ctgtatagtttgcttgatggatctgcagataattcaaagtttgaggatgattgccgatca
atcattggaaatcagtcatatgtgctattcacgttggacaagttgatatataagctggtc
aaacagcttcaaacggtctcgagtgatgagctggacggtaagctgcttcagttgtatgaa
tatgaaagattaaggaaaccagagaagtttgttgatacagcttattatgaaaatgctcat
gtgctcctccacgaagagagtatataccggtttgaatgtacctcttcccctacccgtctg
tccatccagttgatggatggtggaagtgataagtctgaagtagttgcagttgctgtagat
cccaaattttcaggttatctgcataatgattatctgtcggtcgaacatgggaaaaaggag
tcttctgcagttctgctgaagagaaataagcggaaacatgccaaccatgatgaatctact
gctttttgcatggcaatggaacatgttattcttgtaaatggtctggaatgcaagatggct
tcaaactcatcgaagatctcttatgtgcttgacactgaggacttctttttccgtcgggga
aggaaactaaaaaaagtttcagctggcagattgtcatgccattaccagactagagtagaa
cagttccatcgtgttttgttgtcctcttcatga
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