Nicotiana tomentosiformis: 104120387
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Entry
104120387 CDS
T05025
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03013
Nucleocytoplasmic transport
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104120387
03015 mRNA surveillance pathway
104120387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104120387
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104120387
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
104120387
NCBI-ProteinID:
XP_009630436
LinkDB
All DBs
Position
8:9168773..9175343
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AA seq
413 aa
AA seq
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MAKPGRGRAASPSGSSSRSPSRSRSRSRSYSSRSSSSRSRSRSRSFSSSSSSGSSRSPSP
RPPPSQRKSPVGVSKRGRSPPPLSKKASPPPRKVSPTPESRVLHVDQLSRNVNENHLKEI
FGNFGEILHVQLVIDHVVNLPKGFAYVEFKTRIDAEKAQLHMDGAQIDGKIVHAKFTLPE
RKKAPSPPRAAATSSRRDAPRTDNAPVDLEKDGPKRQQELSPRRKPVSPPRRSPIGRRGS
PRREPDSPARRRAESPIRRRAGSPYRRGSPPGPRRRPASPIRRRSPSSPPRRYRTPPRGS
PRRIRGSPVRRRSPLPPRRRSPPRRARSPPRRSPVGRRSSRSPIRRPIRSRSRSISPRRG
RVPATRRGRSSSYSSSPSPRKAPRRISRSRSPRKPLRGRSPSNSDSSSSPRKP
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaggccgaggccgtgcggcttcaccgtcaggctcgtcttctcgttctccg
tcgcggtctcgttctcgctctcgctcttactcttctcgttcctcgagttctcgatctaga
tcccgctccagatcgttttcttcctcctcctccagtggcagttctcgcagccctagcccc
cgacctcctccttctcagcgaaaaagccctgttggagtatctaagcgaggccgttcaccg
ccgccactatctaagaaagcttctccacctccaaggaaagtctctccaactcctgagtca
cgtgtgcttcatgtggatcagctcagcaggaatgtcaatgaaaaccatctgaaagaaata
tttggtaattttggtgaaattctgcacgtgcagttggtcattgatcatgttgttaacctt
ccaaaagggtttgcttatgttgagttcaagactagaattgatgctgagaaagcccaacta
cacatggatggtgcacaaattgatgggaaaatagttcatgctaagttcaccctgccagag
aggaaaaaggctccctcacctccaagggctgctgcaacttcctcaaggagagatgctcca
agaactgataatgcccctgttgatttggagaaagatggaccaaaacggcaacaagagtta
tctcctcgtcgaaaacctgtctctccacctcgaaggtctcctataggacgaagaggatct
cctagacgtgagccagattctcctgcccgtcgacgtgctgagtctcctattcgtcgtcgc
gcaggttctccttataggcgcggcagtccaccgggcccaaggaggaggcctgcatctccc
attagacgacgttcaccatcctctcctccaagacgttatcgaacacctcctaggggctct
cccagaagaattcgtggcagtcctgttcgaagacgttctccccttccgccaaggcgacgt
tctccaccgcgacgtgctagaagtccacccagaagatctccggttggtcgccggtctagc
cgctcacctattaggagacctatccgttcacgatcaagatccatctctcctaggcgggga
agggttccagccacaagacgtgggaggtcatcatcctactcttcttctcccagtcctcga
aaggcaccccgcaggatttcaaggagtcgtagtcctagaaagcctttaagagggaggagc
cccagcaacagtgacagcagcagttcgcctcgtaagccctaa
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