Nicotiana tomentosiformis: 104120729
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Entry
104120729 CDS
T05025
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03022
Basal transcription factors
nto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104120729
09124 Replication and repair
03420 Nucleotide excision repair
104120729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104120729
03400 DNA repair and recombination proteins [BR:
nto03400
]
104120729
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104120729
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104120729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
VWA
Motif
Other DBs
NCBI-GeneID:
104120729
NCBI-ProteinID:
XP_009630848
LinkDB
All DBs
Position
5:106585283..106592597
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AA seq
415 aa
AA seq
DB search
MNNEEKRFNREEEDEDEESGRGREAWERTYADERSWESLQEDESGLLRPIDNKTLSHAQY
RRRLRTATAARVQKGLIRYLYIIIDFSRAAAEMDYKPSRMVVVAKQVEAFVREFFDQNPL
SQIGLVILKDGVAQCLTDLGGSPEAHIKALMGKLGTSGDASLQNGLDLVCDLLNQIPSYG
HREVLILYSALSTCDPGDILETIQKCKASKIRCSVIGLSAELYICKHLCQETGGMYYVAL
DEPHLKELVLEHAPPPPAIAEFAVANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPR
CKARVCELPTECCICGLTLVSSPHLARSYHHLFPIRPFDDVSPSLLKDIHKLPKNCFGCQ
QSLLNPGNLPGLQVACPNCKHHFCLDCDIYIHESLHNCPGCESLRNSKTISDMNE
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgaagaaaaacgatttaaccgagaagaagaagatgaggatgaggaaagtggg
agaggtcgagaagcatgggaaagaacttatgcagatgaaagatcatgggagtctttgcag
gaggatgaatctggactccttcgtccaattgacaacaaaactctatcccatgctcagtat
cgacgacgtctccgcactgcaaccgctgcacgagttcagaagggcctgattcgctacctt
tacattatcattgatttctccagggcagctgcagaaatggattataagccaagccgaatg
gttgtagttgctaagcaagtggaggcttttgtaagagaattttttgatcagaatcccctc
agtcagattggcttggtgatcttgaaagatggagtagctcagtgtttaacagatcttggt
ggcagtccggaggctcatatcaaagcattgatgggtaaattggggacctcaggtgatgca
tcccttcagaatggcctagatcttgtgtgtgacctcctaaaccagatcccatcatatggt
catcgtgaagtccttatcttgtattctgctcttagcacatgtgatccgggggatatactc
gaaaccatccagaaatgtaaagcgtctaagataaggtgctcagtaattggtctctctgcc
gaactctatatatgcaagcatctctgccaagagactggtggaatgtattatgttgcgttg
gatgagccccatttaaaagagttggtattagagcatgctccacctcctccagcgattgca
gagtttgctgttgcaaatttgatcaagatgggattcccccaaagagcagcagagggtgtc
atttcaatttgttcatgtcataaagaggctaaggttggtggtggatacacttgtccgaga
tgcaaagcacgcgtatgtgagctgcctactgaatgttgtatctgtggactgacccttgtg
tcttctccacatttggcaaggtcatatcaccacctgttcccaataaggccatttgatgat
gtttcaccttcacttctgaaagatattcacaagttaccaaagaattgctttggttgccag
caaagtctcctaaatcctggaaatttgccaggtctacaggttgcttgtccaaactgcaaa
caccacttctgccttgattgtgatatttatatacatgagagcttgcacaattgtccaggt
tgtgagagcttaaggaattccaagaccattagtgatatgaatgaatga
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