Nicotiana tomentosiformis: 104120973
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Entry
104120973 CDS
T05025
Name
(RefSeq) ubiquitin receptor RAD23d-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03420
Nucleotide excision repair
nto04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104120973
09124 Replication and repair
03420 Nucleotide excision repair
104120973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
nto03051
]
104120973
03400 DNA repair and recombination proteins [BR:
nto03400
]
104120973
Proteasome [BR:
nto03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
104120973
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
104120973
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
UBA_7
UBA_RAD5A
Rad60-SLD_2
CUE
Dsc3_N
TECR_N
UBA_3
Ubiquitin_4
Ubiquitin_2
NQRA_N
Motif
Other DBs
NCBI-GeneID:
104120973
NCBI-ProteinID:
XP_009631150
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Position
4:32614504..32625888
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AA seq
395 aa
AA seq
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MKIFVKTLKGSHFEIEVKPEDTVADVKKNIETVQGSDVYPAGQQMLIHQGKVLKDGTTLE
ENKVAENNFIVIMLTKSKSSPGEGSATSTAPTAKVPQSSTPAPSSSHASTTAQVPAALSA
PTPAPAPAPTPSPPAPAAAPASTAVPGSDVYGQAASSLVAGNNLDGAIQQILDMGGGMWD
RDTVVRALRAAFNNPERAVEYLYSGIPETAEVPPVGGSPPSAQAGNQPAQPQPAAQPAPV
PAGGPNADPLNLFPQGLPSMGSNTGGANTLDFLRNSQQFQALRAMVQANPQILQPMLQEL
GKQNPQLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAAMPQAIQVTPEEREAIERLEQ
MGFDHDLVLEVFFACNKNEELAANYLLDHMHEFEE
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgaagatttttgtaaaaactcttaaaggctctcactttgaaatcgaagtcaaacctgaa
gacacggttgccgatgtgaagaagaacatagaaacagttcagggctcagatgtttatcct
gctggccaacaaatgcttatccaccagggaaaggtccttaaagatgggacgacactggaa
gaaaacaaagttgctgaaaacaactttatagtaatcatgttaacgaagagtaagagctca
cctggagaaggttcagcaacgtcaactgcaccaacagctaaggtaccgcagtcaagtacc
ccagcacctagttcaagtcatgcatcaacaactgctcaagtcccagctgccttgtctgcc
ccaactcccgctcctgcccccgctcctaccccttctcctcctgctcctgctgctgctcct
gcatcaactgctgtgccaggatccgatgtctatggccaagcagcttcaagcttggtcgct
ggtaacaaccttgatggagccattcagcagattcttgacatgggtggtggaatgtgggat
agggacacagttgttcgagctctacgggcagcttttaacaatcccgagagagctgttgaa
tacttgtactctggtattcccgagacagcagaggttcctccagttggtggaagtccaccc
agtgctcaggcaggaaaccaacctgctcagcctcagccagcagcacaaccagcacctgtt
cctgcaggcggacccaatgcagatcctttgaatctctttccccagggtcttcccagcatg
ggatctaatactggtggtgcgaacaccttagactttctaaggaacagtcagcagttccaa
gctttacgagcaatggttcaggccaacccacaaattttgcagcccatgcttcaggagcta
gggaagcagaatcctcagctaatgaggcttatacaggagcaccaggctgatttccttcgt
cttatcaatgagcctgttgagggaggagaaggcaacatactgggccagcttgcagcagca
atgccacaggctatacaagtaacacccgaagagcgtgaagccatagaacgtcttgagcaa
atgggcttcgatcatgaccttgtactagaagttttctttgcctgcaataaaaatgaggag
ctcgctgctaattacctcttagatcacatgcacgagtttgaggagtga
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