Nicotiana tomentosiformis: 104121067
Help
Entry
104121067 CDS
T05025
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto00040
Pentose and glucuronate interconversions
nto01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
104121067
Enzymes [BR:
nto01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
104121067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
104121067
NCBI-ProteinID:
XP_009631254
LinkDB
All DBs
Position
6:71923508..71925714
Genome browser
AA seq
406 aa
AA seq
DB search
MAISSLSLLFLLSYFLLIPALFASSTLQNPQSVVDQVHRSINNASRRNLGYLSCGTGNPI
DDCWRCDPNWEKNRQRLAECAIGFGKNAIGGRDGKIYVVTDSGNDDPVNPKPGTLRYAVI
QNEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHITGGPCITIQYVTNIIIHGIHIH
DCKQGGNAMVRSSPQHYGWRTISDGDGVSIFGGSHIWVDHCSLSNCKDGLIDAIMGSTAI
TISNNYMTHHDKVMLLGHSDSHVQDKNMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWEMYAIGGSANPTINSQGNRFLAPDIRFSKEVTKHEDAPESEWKKWNWRTDGDLMLNG
AYFIQSGAAASSSYAKASSLSAKPSSLITSIVSSAGALTCRKGSPC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcaatctcctctctttctctccttttcctcctgtcctattttctcttaattcctgcc
ctttttgcctcttctaccttacaaaatccccaatctgttgttgatcaagtgcataggagt
ataaacaatgcctcaaggaggaacttgggctatctctcttgtggcacgggaaaccctata
gatgattgctggcgttgtgatcccaactgggaaaagaaccgccaaaggctagctgaatgt
gctattggctttggaaagaatgccattggcggcagagatggcaagatttacgtggtcacc
gattccggcaacgacgatcctgttaaccctaaaccgggcactctccgatatgctgtcatt
caaaacgagccattatggatcatttttgctagggacatggtgatccaactgaaagaagaa
cttattatgaactcattcaagaccattgatggaagaggagctagcgttcacattacaggt
ggaccatgcataacaatacaatacgtgaccaatattatcatccatggaattcacatacat
gattgtaagcaagggggaaacgctatggtgaggagctctccacagcattatgggtggagg
actatatcagatggtgatggagtgtccatttttggtgggagtcatatttgggtagaccat
tgttccttgtcaaattgcaaagatgggttgattgatgctattatggggtccactgcaatt
accatttctaacaattacatgactcaccatgataaagttatgctgttgggacacagtgat
tcccatgtccaagacaagaacatgcaagtaacagttgccttcaatcactttggagaaggc
cttgtccaaagaatgccaagatgtagacatggttacttccatgtggtgaacaatgactat
actcactgggaaatgtatgctattggtgggagtgctaatcccaccatcaatagccagggc
aacagattcctggctcctgatatcagattcagcaaagaggtgacgaagcatgaggatgca
ccagaaagcgagtggaaaaaatggaattggagaacagatggggacctaatgttgaatggt
gcatatttcattcaatcaggagctgcagcctcttcaagctatgccaaggcttcaagcttg
agtgctaaaccctcttccctaataacctccattgtttcaagtgccggcgcccttacttgc
cggaaaggttccccttgctga
DBGET
integrated database retrieval system
