Nicotiana tomentosiformis: 104121178
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Entry
104121178 CDS
T05025
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104121178
03036 Chromosome and associated proteins [BR:
nto03036
]
104121178
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
104121178
Chromosome and associated proteins [BR:
nto03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
104121178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
Tex_central_region
HHH_9
HHH_3
SH2
Tex_N
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
104121178
NCBI-ProteinID:
XP_009631400
LinkDB
All DBs
Position
2:complement(10583647..10593706)
Genome browser
AA seq
1644 aa
AA seq
DB search
MAGKNVISDDEDEVGIEDEERDEEPVDGDGVDERDEEDEDEEEDEEGQDEYEKDGFIVDD
VEEEEEEGEEDRADSDDERQKKKKRKKRESERNYMLDEDDYELLQESNIAVPRPKLESKK
FKRLKKAQRDMDDARSGFSEEEEFDETGRRGRTAEEKLEHSLFGDDEGPPLEDIAEEEER
LEEEEDADIGEEDEMADFIVDEEEVDEHGAPIRRKKVNKKKSRQASGVSSSALQEAHDIF
GDVDELLMRRKQDRAKSGRHDESGEWSERRLEDEFDPTILSEKYMTEKDERIRKIDVPER
MQVSEESTGPVPPEAISVEESNWIYNQLAAGVVPFFKIKKKDSGKTDEESELPIDKDDIM
RFLDLMHGQKLDVPFIAMYRKEECMSLLKDPEEDETSDDGPNNSDKKPAVRRQKVLWAIQ
DLDRKWLLLQKRKSALELYYKKRFQEESRRVYDETRLKLNQQLFESITKSLQVADCEREV
DDVDSKFNLHFPPGEVGVDEGQYKRPKRKSQYSICSKAGLWEVASKLGYSAEQFGSHMSC
ESMGDLLEDARETPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPSVRKQVRKTFMD
DAKVSTSPTPDGNVVIDSFHQFAGVKWLRDKPLSDFEDAQWLLIQKAEEEKLLKVTIKLP
EVVLDKLITDSRDHYLSDGVSKSAQLWNEQRKLILEDAFFNFLLPSMEKEARSLLTSRAK
SWLLSEYGKFLWNKVSVGPYQRRESDVGSDEEPMPRVMACCWGPGKPATTFVMLDSSGEV
LDILYAGSLSLRGQNVNDEQRKKNDQQRLLKFMMDHQPHVVVLGAVNLSCTRLKEDIYEI
IFKMVEDNPRDVGHEMDNLNIIYGDETLPHLYENSRISVDQLPGQSGIVRRAVALGRYLQ
NPLAMIATLCGPGKEILSWKLSTLDSFLTSDEKYGMVEQVMVDVTNQVGVDLNLAISHEW
LFAPLQFISGLGPRKAASLQRSLVRQQTIFTRKDLLTEHHLGKKVFVNAVGFLRVRRSGY
TANSNTYIDLLDDTRIHPESYGLAQELAKDIYLNDIGEENNDDDELLEMAIEHVREKPHL
ARLLEVPNYAKAKDRQDKEETLNDIRLELMQGFQDWRRQYVEPSQDEEFYMISGESEETL
SEGRIVQATVRRVQPQKAICALESGLTGILTKEDSSDDWRDVNDLTEKMREGDILTCRIK
SIQKNRYQVFLSCKENDMRNNRYQNNQNLDPYYHEDRSSLQAEKDKARKEKELAKKHFKP
RMIVHPRFKNITADEAMEFLSDKEPGESIVRPSSRGPSYLTLTLKVYDGVYAHKDIVEGG
KEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFRKGTKAEVDE
LLRIEKSEYPMRIVYSFGISHEHPGTFILTYIRSSNPHHEYVGLYPKGFKFRKRMFEDID
RLVAYFQRHIDDPHDSAPSIRSVAAMVPMRSPAGGGSGFGGGWGGSSNDSGRRGGQSGDR
DSRPGRNDYRNRSSQDDPSGLPPRPYGGGGRGRGRGRGRGTYGRGRGNNDNDGQDSDYGT
QKWGSKEGGGGWGAEVQNSPARDTFSGGWSGGGSGAGGGSGDGGGWGASGSGGGGWGQDT
GGQSDDSGWGGGKKGSQSGGSGGW
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaaacgtgatctccgatgacgaagatgaagttggaattgaggatgaagag
agggatgaagagcctgttgatggagacggagtagatgaacgggacgaggaggatgaagac
gaagaagaagatgaagaaggtcaggatgaatatgagaaagatgggtttatagtagatgat
gtggaagaagaagaggaagagggtgaagaagatagagctgacagtgatgatgagaggcaa
aagaagaagaaaaggaagaaaagggagtcagagaggaattacatgcttgacgaagatgat
tatgaactacttcaggaaagcaacattgcggtgcctcgtccgaaacttgagagcaaaaag
ttcaagcggctaaaaaaagctcagagggatatggatgatgcgcgttctggtttttctgag
gaggaagagtttgacgaaactgggaggcgtgggcgtacagctgaggagaagctagagcat
agcttatttggtgatgatgaagggccaccactcgaggatattgctgaggaggaagagcgg
ctggaggaagaagaggatgctgatattggagaggaagatgaaatggccgactttattgtt
gatgaagaagaagttgatgaacatggcgctcctattagaaggaagaaggtgaacaaaaag
aagtccaggcaggcatcaggagtttcgtcttctgctctccaggaagcccatgacatattt
ggtgatgttgatgaacttttaatgcgtcgaaaacaagatcgggcaaaatcaggcaggcac
gacgaatctggtgaatggagtgaaaggagacttgaagatgaatttgatcctactattcta
tctgagaagtatatgacagagaaggatgagcgcattcggaaaatagatgtccccgaaaga
atgcaggtatccgaggaaagcactggtcctgtgccacctgaagctattagtgtggaagag
agtaactggatctacaatcagcttgctgctggcgttgtgcctttctttaagattaagaag
aaagatagtgggaaaactgatgaagagagtgagctaccaatagataaagatgacatcatg
agatttctggatttgatgcatgggcagaagcttgatgtcccgttcattgccatgtaccgg
aaagaggaatgcatgagcttattaaaggatccagaagaggatgaaactagtgatgatggc
cccaataattctgacaaaaagcctgctgtaagacggcagaaggtgctttgggcaatccaa
gatttagacagaaagtggctcctccttcagaagcggaagtctgcgctcgagttatactat
aagaagcgctttcaagaagagtcccgtagggtgtatgatgaaacacgtcttaagttgaat
cagcaactctttgaatcaattacaaaatcactccaggtggcggactgtgaaagagaagtt
gatgatgttgactcaaaatttaacttgcactttccacctggagaggttggtgtggatgaa
ggacaatataagaggccaaagaggaaatcacaatacagtatttgcagcaaagccggctta
tgggaagttgcaagcaagttgggatatagtgccgaacaatttggttcacacatgtcttgt
gaaagtatgggggatttgctggaggatgctagggaaacaccggaggagatggcgtcgaac
ttcacctgcgcaatgtttgaaacaccgcaagctgtgcttaaaggcgctagacacatggcg
gcagttgagataagctgtgaacctagtgtccggaaacaggtgcgcaagacctttatggat
gacgccaaagtatcaacgagtcctactcctgatgggaatgtggtgattgattccttccat
caatttgctggagtaaagtggttacgggataaacctctctctgattttgaggatgcacag
tggcttctcatacagaaggcagaagaggagaaactcctcaaagttactatcaagctgccc
gaagttgttcttgacaagctgataactgactcgagagatcattatctcagtgatggtgtg
agtaaatctgctcagttatggaatgagcagagaaagttaatacttgaggatgcatttttc
aattttcttctgccttcgatggagaaggaagctagatcgttgctgacgagtagagcaaag
agctggctgctttcggaatatggaaagtttttgtggaataaagtgtctgtgggaccatat
caacgcagagaaagtgatgtcggctctgatgaagagcctatgcccagggttatggcttgc
tgttggggccctggaaagccagcaactacttttgtgatgttggattcgtcgggagaggtt
ttggatatcctgtatgctgggtctctcagccttcgtggacagaatgttaatgatgagcag
cggaagaagaatgaccagcagagactgttaaaattcatgatggaccaccaaccacatgtt
gtggtgctgggagctgtaaatctatcttgtacgcggctgaaggaggatatttatgagata
attttcaaaatggtggaggataatccaagagatgttggtcatgagatggataatttgaac
ataatatatggagacgaaacccttccacatctctatgagaattcccgcatttcagttgac
cagctccctgggcagtcaggtattgtgaggcgcgctgtggcactgggacgttatcttcaa
aatcctttagcaatgatagcgacattgtgtggaccaggcaaggagattttatcttggaag
ctgagtactttagatagttttcttacatcagatgagaagtatgggatggttgaacaggtt
atggttgatgtaactaaccaggtgggtgttgatcttaatttggctataagtcatgaatgg
ttgtttgcccctctgcaatttatttcggggctaggtcccagaaaggcagcatctcttcaa
agatccttggtaagacagcagacaatcttcactaggaaggatctcttgactgaacatcat
cttggtaaaaaggtatttgtgaatgcagttggcttcttgcgagtaaggcgtagtggatac
actgctaacagtaatacatatattgacttgttggatgatacaaggatccacccagaatcc
tatggtcttgcacaggagttggccaaagatatttatcttaatgatatcggtgaagaaaat
aatgatgatgatgaactgcttgaaatggcaatagagcatgttagagagaagccacatctg
gcgaggttgcttgaagttccaaactacgccaaagccaaagatcgtcaggacaaagaggaa
actcttaacgatataaggttagagctgatgcaagggtttcaagattggcgtagacagtat
gtggagccaagccaggatgaggagttctatatgatttctggcgagtctgaggagacactt
tccgagggaagaattgtgcaggcaacagttcgccgagttcaacctcagaaagctatctgt
gctctcgagtctggattgactggcattcttaccaaagaagattcttcagatgattggaga
gatgtcaatgatttgactgaaaaaatgcgtgaaggtgatatcttaacttgcagaatcaag
tcgatccaaaaaaataggtaccaggttttccttagctgtaaagagaatgatatgagaaat
aataggtatcagaataatcagaacttggatccatactaccatgaagatcgcagtagttta
caggctgaaaaggataaagctcgtaaagaaaaggagctcgcaaagaagcatttcaagcca
aggatgatagttcatcctcgattcaaaaatataacggcagatgaagcaatggagttcttg
tcggacaaggaaccgggtgaaagtatcgtacgtcccagctcacgcggaccatcttatttg
actttaactctcaaagtgtacgatggagtttatgctcacaaggatattgtggaaggtgga
aaggaacataaggacataacaagcttgctccgtatcggaaaaacattgaaaataggagag
gatacttttgaggatttagatgaggtaatggatcggtatgtcgatccattagtagctcat
ttgaaagcaatgctgaattaccgcaagtttaggaagggaacaaaggcagaagttgatgaa
cttttgagaattgagaaatctgagtaccctatgaggattgtctatagctttggtatttct
catgaacaccctgggacattcattttgacttatatacggagttccaacccgcaccatgag
tatgttggtctgtatccgaaaggatttaaattccgcaagaggatgtttgaagatattgat
cgccttgtggcatattttcaaagacatattgatgatccccatgactctgcaccatcaata
cgatcagttgcagcgatggtacctatgcgcagccctgcaggtgggggctcaggatttggt
ggcggttggggtggttcatccaatgatagtggtcgaagaggtggtcagtctggggacaga
gattctagaccaggtagaaatgactacagaaatcgaagcagtcaggatgatccaagtgga
ttgccgcccaggccctatggtggtggtgggcgtgggcgtggtcgtggacgtggtcgggga
acatatggacgtggtagaggaaataacgataatgacgggcaagattcagattatggcact
caaaagtggggttctaaggaaggtgggggaggatggggtgcagaagtccaaaattcacct
gctagagacactttctctggtggttggagtggtggtggaagtggtgccggaggtggtagc
ggagacggaggtggttggggtgctagtggtagtggtggtggtggctgggggcaggatacc
ggtggtcagtccgatgattctggctggggtggcggtaaaaagggttcacagtccggtggc
agcggagggtggtga
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integrated database retrieval system
