KEGG   Nicotiana tomentosiformis: 104121392
Entry
104121392         CDS       T05025                                 
Name
(RefSeq) exosome complex component RRP41 homolog
  KO
K11600  exosome complex component RRP41
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104121392
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nto03019]
    104121392
Messenger RNA biogenesis [BR:nto03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     104121392
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     104121392
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 104121392
NCBI-ProteinID: XP_009631673
LinkDB
Position
1:47102811..47107282
AA seq 241 aa
MEYVNPEGLRLDGRRPMEMRQIRAEIGVVSRADGSASFEMGNTKVIAAVYGPREVQNRSQ
QINDQALVRCEYSMANFSTGDRRRKNKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF
VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYLEDSAGGPD
VTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAVEGCKAVESHIREILLENTKKLEIRRG
V
NT seq 726 nt   +upstreamnt  +downstreamnt
atggagtacgttaatccggaaggtcttcgcttagatggtcgccgtcccatggagatgaga
caaattcgtgctgaaattggggttgtctcaagagctgatggttctgcttcttttgaaatg
ggtaataccaaagtcattgctgcagtttatggtcccagggaggtccagaacaggagccaa
cagatcaatgaccaggcgctggtacgatgcgaatatagcatggctaatttcagcactggt
gatcgccgaagaaaaaataagggcgacaggagatccacagagatatctcttgttattcgc
cagacaatggaagcttgcatattgacacacctaatgcctcgctctcagatagacattttt
gtccaagttctccaagcagatggaggtacaagatcagcatgcataaatgctgccacgctg
gcactagctgatgctgggattcccatgcgtgatcttgtcacatcgtgcagtgctggatac
ctcaacagcacgcctcttcttgatctaaactacttggaagacagtgctggcggtcctgat
gtcactgtaggaattttacctaagttggacaaagtgacccttctgcagatggatgctaaa
ctaccaatggatatttttgaaaatgtcatgcaattagcagttgaaggctgcaaagcagtg
gaaagccatatccgggaaatattattggaaaacaccaagaagttggagattcgccgaggt
gtatag

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