Nicotiana tomentosiformis: 104121675
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Entry
104121675 CDS
T05025
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104121675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104121675
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104121675
mRNA degradation factors
5'-3' decay
Decapping complex
104121675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
104121675
NCBI-ProteinID:
XP_009632021
LinkDB
All DBs
Position
7:53565631..53577756
Genome browser
AA seq
1413 aa
AA seq
DB search
MASSPGNPNQPGGSGPFDMHKFFKPNPNSPNPIPNQNPNLISSPFPPPNASYPPPTVAGA
GAGGVYPYPPQTTAAPFHHHHPQFNHPHLAPQYTTPLPQHDTTQFAHQQRSMSFPTPPLQ
PPPPQPTSPHQFPNPNPNPGARLMALLSAPPSTLEIPPIQPTTSGSELSEFSSGPNVPGA
GPMRMASSKLPKGRHLNGDHIMYDIDVKLPSEVQPQLEVTPITKYGSDPGLVLGRQIAVN
KTYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASIDGRVYVWKI
TEGPDEEDKPQITGKIVIAVQIVGEGESVHPRVCWHCHKQEILVVGIGRRILKIDTTKVG
KGSVFSAEEPLRCPVDKLVDGVQLVGTHDREVTDLSMCQWMTTRLVSASVDGTIKIWEDR
KSLPIAVLRPHDGHPVNSVTFLAAPHRPDHIVLITGGPLNREVKIWASASEEGWLLPSDA
ESWRCTQTLELKSSAEAQAGEAFFNQVVALSQAGLLLLANAKKNAIYAVHLEYGPNPVAT
RMDYIAGFTVTMPILSFTGTSDLLPNGEQIVQVYCVQTQAIQQYALDLSQCLPPPTENVV
FERTESGVSRDAASIEGSAPVDPPRSKQQELPLSSSALKSSVHEGGSEISPTARHPTSTA
PTESATSQELASSIIETKSSTFPTVTSDSDIAPIASPPPPLSPTLSRKLSGFRGPSNSFE
RGTSDNEQVGDPKVVEYSVDRQKEGTTPNVSDVTSLDDEPKNDESKLSQNDVPSGISPPV
KFKHPTHLVTPSEILMARSSSEVNIVNEQKSESELTIQDVVINNDARNVEVDVKVVGEAR
FSQKTDVGSQEELHSFVSENKEKAFCSQASDLGIEMARECRALSPETYTVEESRQFDGAG
RSEGPLQPSSTLEEDRDSAKETSEKDLDSTMSVTVHQAPAPTAKGKKQKGRNTQVSGPSS
SSPSVFNSTDSLNEAGLSSSTPSVEAAFSQILSMREMLNQLLTMQKDTQKQMEMMVAVPV
TKEGRRLEAALGRSMEKSVKANSDALWARLQEECAKQEKSLRDRTQQMANLISNCLNKDM
PGLIEKLMKKELAAVGQAVARSITPTIEKTVSVAISEAFQRGVGDKAVNQLEKAVNSKLE
ATVARQIQAQFQTSGKQALQETLKSTLEASVIPAFEMSCKAMFEQVDLTFQKGIADHSAA
AQQQFESMHSPLALALRDAINSASSMTQTLSGELADSQRKLLALAVSGANPQSANPLVSH
MNNGSLLHEKIETPPDPTKELSRLLAEHKYEEAFTAALQRSDVSIVSWLCSQVDLPGILS
LNPLPLSQGVLLSLLQQLACDISKETVQKLSWMRDVLTAINPTDPMIAVHVRPIFEQVYQ
ILHHRRSIATTPAAELSNIRLILHVINSMLMSK
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcctggcaatccaaaccagccaggtggttcaggaccattcgatatgcac
aaattcttcaaaccaaaccccaattcaccaaaccctattcccaatcaaaaccctaattta
atttcctcccctttcccacctcctaacgcttcttaccctccacccaccgttgccggcgcc
ggtgccggaggggtgtacccgtatccacctcaaacaacagcagccccatttcaccaccac
caccctcaattcaatcacccccacctagccccccaatacaccaccccactacctcaacat
gataccacccagtttgctcatcagcaaagatccatgtctttccccaccccccctcttcaa
ccacccccaccccaacctactagtcctcaccaattccctaatcctaaccctaaccctggt
gctaggcttatggctttattgagtgctcccccttctactcttgaaatccctcctatacaa
cctaccacttctgggtcagagctctctgaattttcctctggcccaaatgtcccgggcgcg
ggacctatgagaatggcgagcagcaagttgcctaaaggccggcatttgaatggtgatcac
attatgtatgatattgatgttaagttgcccagcgaggtgcagcctcagctcgaggttact
cctattacaaagtatgggtcggatccgggtcttgtattgggtcggcaaattgcagttaac
aaaacttacatatgttatggattgaaattgggggctattcgggttcttaacattaatact
gccttgagatcgttgcttaaaggccttgcgcagagggtcacagacatggctttctttgca
gaggatgttcatctcttggctagtgcgagtattgatggccgggtttatgtatggaaaatt
accgaaggaccagatgaagaagataagccacaaattacaggaaagattgtcattgctgtt
caaattgtgggtgaaggggaatctgtgcacccacgtgtttgttggcattgtcataaacaa
gaaattctcgtggttggaatcgggagacgcattttgaaaattgataccactaaagtggga
aaaggttcagttttttcagctgaggaacctctcaggtgtcctgttgacaagttggttgat
ggggtacaacttgttggtacccacgatagagaagtgactgatttatcaatgtgccagtgg
atgaccacgcgtttggtatctgcttcagtggatggcacgataaagatatgggaagaccgg
aagtcacttcctatagcagttctcaggcctcatgatggtcaccctgttaattctgttacc
ttcttggctgctccacaccgtccagatcacatcgtactcatcactgggggtcctcttaat
cgggaggtaaagatatgggcatcagcaagtgaagagggctggttgcttcctagtgatgct
gagtcatggcgctgtacacagacattggagctgaagagttcagctgaagctcaagctgga
gaggcattttttaaccaagttgtagccttatctcaagcaggtttgcttctactagcaaac
gcaaaaaagaatgctatatatgctgtgcatctggagtatggcccaaacccggtggcaacc
cggatggattacatagcaggatttacagttaccatgccaattttgagtttcactgggacg
agtgatctattgcccaatggtgaacagattgttcaggtgtattgtgtacagacgcaggcc
attcagcagtatgctttggacttatcccaatgcttgccacctccaacagagaatgtggtt
ttcgaaaggacggaatccggtgtttcgcgtgatgctgctagcattgaaggatctgctcct
gttgacccccctagaagtaaacagcaggagcttcctttatctagttctgcacttaaatca
tctgtacatgaaggtggctctgagatatcaccaacagctcgacatcctacaagtactgca
cctactgaatcggccacctctcaagaattagcttcctccattatagaaactaaatcgtct
acttttcccactgtaactagtgatagtgatattgcccccattgcatcacctccgcctcct
ttgagtcctacattgtctcgaaaactatctggttttagaggtccatcaaacagctttgag
cgtggcacctctgataatgagcaagttggggatccaaaagttgttgaatattcagttgat
cggcaaaaggagggcacaactccaaatgtgtctgatgttacttccttggatgatgaacct
aaaaatgatgaatctaaactgtcacagaatgatgttccctcgggtatcagtccccctgtt
aagttcaagcacccaactcatttggtgactccttcagaaatattgatggctagatcatcc
tctgaggttaacattgttaacgagcagaaaagtgagtcagaattgactatccaggatgtt
gtaattaacaatgacgcccgtaatgtagaggtggatgttaaagttgttggtgaagcaaga
ttcagtcagaaaactgatgttggctctcaagaagaacttcattcttttgtgtcagaaaat
aaggagaaagccttttgctctcaagcatctgatcttggaatagaaatggctcgagaatgt
cgcgctttatctcctgaaacctatactgtggaggaatctaggcagtttgatggggctggc
agaagtgagggaccgttgcaaccttcaagtacactagaggaagatcgtgactctgcaaag
gagacctctgaaaaggatctggactcaacaatgtcagtcactgttcatcaagcaccagct
cccactgcaaaagggaaaaagcaaaaggggaggaatactcaagtatctgggccgtcatca
tcatcgcctagtgttttcaattcaacagattctttgaatgaggctggtctcagctcaagt
accccttctgtggaagctgctttctcacaaattctgtccatgcgtgagatgctaaatcag
cttctgactatgcaaaaagatacacaaaagcagatggaaatgatggttgctgtcccagtg
accaaagaaggaagaagacttgaggctgctctgggacggagcatggagaaatctgtcaag
gccaattctgatgctttatgggctcgtttacaagaagagtgtgcaaaacaggagaagtct
cttcgtgatcgtacacaacaaatggccaatttgatctctaactgcttaaacaaggacatg
ccagggctgattgaaaaattaatgaagaaagaactagcagctgttggacaagctgtggca
cgcagtattacccctactattgagaaaactgtatcagttgcaatttcagaagcattccag
agaggagttggtgacaaggcagtgaaccaactggagaaagcagtaaactccaaacttgaa
gctactgtagctagacaaatccaagctcaattccagacctctggcaagcaagctctgcag
gaaacactgaaatctactttggaagcttcagtgatccctgccttcgagatgtcatgcaag
gcaatgtttgagcaagtagatttaacattccagaaaggcattgctgaccactcggctgct
gcgcaacagcaattcgagtccatgcattccccgttggcacttgctctaagagatgccata
aattcagcgtcgtcaatgactcagacattgagcggagagctggctgatagtcagagaaag
ttgcttgctctcgcagtttctggagcaaatccccagtcagcaaatccgctggttagccac
atgaataatggatcattgctgcatgagaagattgagacacctccagatccaaccaaagag
ttatctagactgttagcggagcacaagtatgaagaagcattcactgcagcgttacaaaga
agtgacgtatcaattgtctcgtggttatgctctcaggttgatttgccagggattttgtcc
ttgaatcctcttcctctgagtcaaggagtgctcctttcacttcttcagcagttggcatgt
gatattagcaaagagacagtccaaaaactatcctggatgagggatgtgttaactgccata
aatccaactgatccgatgatcgcagtgcatgtgcggcccatctttgaacaagtatatcaa
atattacaccaccgcagaagtattgctacaacccccgctgctgagctttcaaacattcgg
ctgattttgcatgtaatcaattcgatgttgatgagtaaatga
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