Nicotiana tomentosiformis: 108943248
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Entry
108943248 CDS
T05025
Name
(RefSeq) ATP-dependent RNA helicase DEAH13 isoform X1
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nto03009
]
108943248
Enzymes [BR:
nto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108943248
Ribosome biogenesis [BR:
nto03009
]
Eukaryotic type
90S particles
Helicases
108943248
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHX37_C
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
nSTAND3
ATPase
AAA_19
Dicers_N
PhoH
Motif
Other DBs
NCBI-GeneID:
108943248
NCBI-ProteinID:
XP_070034146
LinkDB
All DBs
Position
6:complement(149005442..149019906)
Genome browser
AA seq
1333 aa
AA seq
DB search
MEPSADINLDTDIWSLNDQDSNAIILPDKKKKKKTEKEQVSKKLKTKNNIKLSQSQKKKL
KKLEEDKEKSILLAESIKTLKKYQIQDDLYSLMWSSRNLGQGETSREKRRREVQFSRAGL
EVPHRDRPVKKRTANGLTSDVLDDSNEMKSSPIVNSNLLQSSVGKGEVQSEALVTPGSPE
ELTCQSGLLVCGGDASVQNKQEEDRTTECLKSDYQQDHLSICDCHNEEQRKSTDDIKDIQ
NASLSNSSNSANCLPQRALTTPTVVHVSRPKEVENKRSDLPIVMMEQEIMEAINENTCVI
VCGETGCGKTTQVPQFLYEAGYGSNHSNGRGGIIGVTQPRRVAVLATAKRVAFELGFSLG
KEVGFQVRHDRRIGDSCSIKFMTDGILLRELQNDFLLRRYSILILDEAHERSLNTDILIG
MLSRIVRERQREYEEQQKKVLSGQMVSPEERIYPLKLVLMSATLRVEDFISGQKIFRDPP
PVMEVPTRQYPVTVHFSKRTEMVDYVGQAYKKILSIHKRLPPGGILVFVTGQREVEYLCQ
KLRKASKEIVERASKVDNQTSLVSEGNTIEENVIKEISEAFDDERSSMTEITERFNSYDE
DHGEIYEYESEISYDSADDSDLDVYGDDAQLLNQKSLSSDGMLDVLGEEGSLTSLKAAFE
ALAGKRTSQPDSGKQELVPISEEGASNESEPLLSKVRNGANGTCAGPMCVLPLYAMLPAS
AQLRVFEEVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKKYNSSNGMEAYEIQFI
SKASAAQRAGRAGRTGPGHCYRLYSSAVFNDMFFDFSNAEILEVPVDGVVLLLKSMHIDK
VANFPFPTPPEPTALVEAERCLKVLEALDSKGRLTPLGKAMAQYPMSPRHSRMLLTVIQI
MQKVKDYSRANTVLAYAVAAAAALSLSNPFLMEFEGNYKDPDGLKQDEKPGAVESERDLG
KEERMRIKKLKETAKVSRAKFSNPTSDVLTVAYALQCFELSGKPLEFCKDNTLHFKTMEE
MSKLRRQLINLVFNSKLCDSQQDFSWRHGTLEDVECAWWIPSNKCPLQLNEEEILGQAIC
AGWADRVAKRIKNVSSLSESDRKVHAVQYQACLVKEIVFLGRRSSISKSAPEYLVYTELL
HTKRPFIQGATSVKENWLVKYAPSLCSFSAPLSDPKPYYDPLNDQVLCWVSPTFGPHLWK
LPLHSLPIENDMSRVSVFACSLLEGKVLPCLKSVQKFLAASPASILKPEASGLKRVGNLL
NKMRTKKRTIDSCAMLRKLWDDNPRELFSEILDWFQQGFHDHFEDLWAKMQLEVFLDPKK
RISKKVKREKRNP
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggagcctagtgcagatattaaccttgatacagacatctggagtttgaatgatcaagat
agcaatgcaattatattgccagacaagaaaaagaagaagaagacagaaaaggaacaggta
tcgaaaaagcttaaaacgaagaataacattaagttaagtcaatctcagaaaaaaaagctg
aagaaactcgaggaagacaaggagaaatcaatccttttagctgaaagcattaagaccttg
aagaagtaccagatccaagatgatctttattcacttatgtggtcttcaaggaacttgggt
cagggtgaaactagtcgagagaagcgtagaagagaagtgcagttttctagggcggggtta
gaagtgccacatagagatcgaccagtcaagaagaggacagccaacggcctaactagtgat
gtcttggatgattctaacgaaatgaagtcgagtccaatagtcaatagcaatcttttgcag
tcctccgtaggaaaaggtgaagtccaaagtgaagcactcgtcactccagggtctcctgaa
gagttgacttgtcagagtggacttttagtttgcggtggagatgcttcggtgcaaaataag
caagaagaggatagaactacagaatgtttaaagtcagattatcagcaagatcatctatca
atttgtgattgtcataacgaagaacagaggaaatcaacggatgatatcaaggatattcaa
aatgccagtttgagcaatagtagcaactcggctaactgtcttcctcaaagagctttaaca
actccaactgtggtgcacgtttcaagaccaaaggaggttgaaaataagaggagcgatctg
ccgatagtcatgatggagcaggagataatggaagctataaatgagaacacgtgtgtaata
gtttgtggtgagacaggttgtggtaagacaacccaagttcctcagttcctttatgaagct
ggctatggttcaaatcattccaatggtcgtggtggtattattggtgtgactcaaccacgc
cgtgttgcggtacttgcaactgccaagcgagtggcatttgagcttggttttagtcttggc
aaagaggttggtttccaagttagacatgacaggaggataggagacagttgctccataaag
ttcatgactgatggaattctgcttcgggaactgcagaatgattttcttttaaggcgttac
tcgatcttaatcttggatgaggctcatgagaggagtttgaacactgatatacttatcggt
atgctttctcgtatagtaagagagcgtcagagagaatatgaggagcaacagaagaaagtt
ctttcaggacaaatggtaagccctgaagagagaatatatccactgaaacttgtgctgatg
agtgctacacttcgagttgaggactttatatctgggcaaaaaattttccgtgatcctccg
cctgtaatggaagtccccactcgccaatacccagttactgttcatttctccaagagaact
gagatggtggactatgtcggccaagcatataagaaaatattgtcaattcacaagagattg
ccacctggtggtatacttgtatttgtgacagggcaaagggaagttgaatacttgtgtcag
aagctgcgcaaagcttctaaggagatagttgagagagcttccaaagtggataatcagacg
tctttggtatctgaagggaataccatcgaggaaaatgttatcaaggagataagtgaggca
tttgatgatgaaaggagttctatgactgagataactgaacgttttaattcctatgatgag
gatcacggggagatctatgaatatgaatcagaaatttcctatgattcagcagatgatagt
gatttggatgtttatggtgatgatgcacagctgttaaaccagaagtctctgagctctgat
ggtatgttagatgttttaggtgaggagggaagccttacatcactgaaggctgcttttgaa
gctttggctggtaaaaggacatcacaacctgattccggcaaacaggaacttgttcctatc
agtgaagaaggagcttcaaatgaatctgaacctctcttaagtaaggttaggaatggggct
aatggaacttgtgctggtccgatgtgtgttttacctctttatgctatgcttcctgcatct
gcacagcttcgcgtgtttgaagaggtcaaggaaggagaacgcctagttgttgttgccact
aatgtggctgaaacttcattgacaattcctggaataaaatatgtggttgacacagggaga
gaaaaggtcaaaaagtacaactcttccaatggtatggaagcttatgaaatacaatttata
agtaaggcttcagctgctcagcgggcaggaagggctggaagaacaggtcctgggcactgt
tatcggctttattcttctgcagtcttcaatgacatgttctttgacttctcaaatgcagaa
atattggaagtaccagttgatggtgttgtcctacttctgaagtccatgcatattgataag
gttgctaacttccctttcccaactcctcctgagccaactgccttagttgaagcagagcgt
tgcttaaaggttcttgaagcacttgatagcaaaggaagactgacacctttagggaaggcc
atggcacaatatccaatgagtcctcgccactcccgtatgctccttacagtaatccaaatt
atgcaaaaggtgaaagattattcccgcgcaaatacagtcttggcttatgcagttgcagca
gctgcagctttgagcttgtcaaatcctttccttatggagtttgaaggaaactacaaagat
ccagatggcttgaaacaggatgagaaaccaggcgcagtagaaagcgagcgagacttaggg
aaagaggaaagaatgagaataaaaaagctgaaagaaactgctaaagtgtctcgtgcaaaa
ttttcaaaccccactagtgatgttctaacagttgcatatgctctacaatgttttgaactt
tctggtaaaccactggaattctgcaaggacaacaccttacattttaaaacaatggaggaa
atgtccaagttgaggcggcagctcattaatcttgtctttaactccaaattatgtgattcg
cagcaagatttctcatggcgtcacgggactttggaagatgtagaatgtgcttggtggatt
ccttcgaacaaatgccctcttcaactgaatgaggaggagattttgggccaagctatttgt
gctggctgggctgacagggttgctaaacgcattaaaaatgtttcatccttatcggaatct
gacagaaaagttcatgctgttcagtatcaggcttgcttggtaaaagaaatcgtattcctc
ggtcgacggtcatctatttcaaaatctgccccagaatatttggtctacactgaactactg
catacaaaaagaccattcatccaaggtgcaactagcgtgaaagagaattggcttgttaaa
tatgctccatcgttatgcagtttttctgcacctctctcagatccaaaaccttattacgac
ccactgaatgaccaggtcctctgttgggtcagtccaacttttggtcctcatctatggaag
ctccctctgcatagtttgccaatcgaaaatgatatgagccgggtgtcagtatttgcttgt
tccttacttgaaggcaaagttcttccatgcctaaaatctgtacaaaaattcttggcagcc
tcgccagctagcattttaaagcctgaggcatcaggtcttaagcgggttggaaatctttta
aacaagatgaggaccaagaagcgaacgattgatagttgtgccatgctaaggaaattgtgg
gatgataatcctcgagaattgttttcagaaattttggattggtttcagcagggatttcat
gaccattttgaagacctttgggcaaagatgcaacttgaagtatttttagaccccaaaaaa
cggatttccaagaaggtcaagagagagaaaaggaacccatga
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integrated database retrieval system
