Nocardia terpenica: CRH09_25390
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Entry
CRH09_25390 CDS
T05168
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ntp
Nocardia terpenica
Pathway
ntp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CRH09_25390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntp03019
]
CRH09_25390
Messenger RNA biogenesis [BR:
ntp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CRH09_25390
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ATL69015
UniProt:
A0A291RNW3
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All DBs
Position
complement(5757012..5759018)
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AA seq
668 aa
AA seq
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MSEPVRRRPRRGASRAAGAPPPAPEPVQPQRKSRARSGSEAPQQVPVEAEIAAAPPETAP
AETEARVRGRAQSGRESDRGATTRRGGRGRQTGRDRGRAEQAAPQEIPVDPHSLPVPPAA
PKHGLRVFALGGIGEIGRNMTVFEYGGKLLIIDCGVLFPEDQQPGVDLILPDFRPIEDRM
GDVVAVVLTHGHEDHIGAVPFLLRQRPDIPVVGSKFTLALVAAKCREHRLQPKLIEVTEG
ERTTHGPFDCEYFAVNHSIPDALAVAVRTPAGLALHTGDIKLDQLPLDGRLTDLAGFSRL
GDEGVDLFLVDSTNAEVPGFVTPEREIGPVLDSVIGKARGRVIVASFASHVHRIQQVVDV
AQRYDRRVCFVGRSMVRNMQIAQDLGYLSIPDQIVVDLDQAATLPGHKLVLISTGSQGEP
LSALSRMARGDHRQINIRADDLVVLASSLIPGNENAVFAVVNGLARKGATVVTQQSAKVH
VSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAVATGVPEDRVVLAEDGVVVDL
VDGIASIVGRYPVGQVYVDGLSVGDVGESTLSDRLILGEGGFISITVAVDEATGKTVTEP
EVSGRGFSDDPGALADAQKLVEAELHRLASEGITDTHRIAQGVRRVVGRWVAETYRRRPM
IVPTVIGV
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagccggtgcgccgtcgtccgcgccgaggcgcgagccgcgccgcgggcgcgccc
ccgcccgccccggaacccgtgcagccgcagcgcaagtcgcgcgcacggtcgggaagcgaa
gcgccgcagcaggttccggtcgaggccgagatcgccgcggcgccgcccgagaccgctccg
gcggagaccgaggccagggtccgcggccgggcgcagtcgggccgcgagtccgaccgcggc
gcgacgacccggcgtggtggccggggtcggcagaccggtcgcgatcgaggccgcgccgaa
caggccgcgccgcaggagattccggtcgatccgcacagcctgccggtgcccccggccgcg
ccgaagcacggcctgcgcgtcttcgcgctcggcgggatcggcgaaatcggccgcaacatg
acggttttcgagtacggcggcaagctgctgatcatcgactgcggcgtgctgttcccggag
gaccagcagccgggcgtcgacctgatcctgcccgacttccggcccatcgaggaccggatg
ggcgatgtggtcgcggtggtgctgacccacggccacgaggaccacatcggcgcggtgccg
ttcctgctgcggcagcggcccgacattccggtcgtcggcagcaagttcaccctcgcgctg
gtggcggccaagtgccgcgaacatcgcctgcagcccaagctgatcgaggtcaccgagggc
gagcggaccacgcacggcccgttcgactgcgagtacttcgcggtcaaccactcgatcccg
gacgccctcgcggtcgccgtgcgcaccccggcgggcctggcgctgcacaccggcgatatc
aagctggatcagttaccgctggacgggcggctcaccgacctggccgggttctcccggctc
ggcgacgagggcgtggacctgttcctggtcgactccaccaatgccgaggtgcccggcttc
gtcacgcccgagcgcgagatcggcccggtgctcgacagcgtgatcggcaaggcccgcggc
cgggtgatcgtcgcctcgttcgccagccatgtgcatcgcatccagcaggtggtcgacgtg
gcgcagcgctacgaccggcgggtgtgcttcgtcggccggtccatggtccgcaatatgcag
atcgcgcaggacctgggctatctgagcatccccgaccagatcgtggtggacctggatcag
gccgcgacgctgcccggccacaagctggtgctgatctcgaccggatcgcagggcgagccg
ctgtcggcgctgtcgcgaatggcgcgcggcgaccatcgccagatcaacattcgcgccgac
gatctcgtggtgctggcctcctcgctcatcccgggcaatgagaacgcggtgttcgcggtg
gtcaacggcctggcccggaagggcgcgacggtggtcacccagcagagcgcgaaggtgcac
gtgtccgggcacgcctcggccggtgagctgctgtacctgtacaacgcggtgcggccgacc
aatgccatgccggtgcacggcgagtggcggcacctgcgcgccaatgcggcgctggccgtc
gcgaccggtgtgcccgaggaccgggtggtgctggccgaggacggcgtagtcgtcgacctg
gtggacggcatcgcctcgatcgtgggccgctacccggtcggtcaggtgtacgtcgacggc
ctgtcggtcggcgacgtcggcgagtccacgctgtcggaccggctgattctcggcgagggc
ggcttcatctccatcaccgtcgccgtcgacgaggccaccggtaagaccgtcaccgagccc
gaggtcagcggccgcggcttctccgacgaccccggcgccctggccgacgcccagaaactg
gtggaggccgaactgcaccgcctggcgagcgagggcatcaccgacacccaccgcatcgcc
cagggcgtccgccgagtcgtcggccgctgggtcgccgaaacctaccgccgccgcccgatg
atcgtcccgaccgtcatcggcgtttaa
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