Nocardia terpenica: CRH09_34655
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Entry
CRH09_34655 CDS
T05168
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ntp
Nocardia terpenica
Pathway
ntp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ntp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CRH09_34655 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ntp03400
]
CRH09_34655 (mfd)
Enzymes [BR:
ntp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CRH09_34655 (mfd)
DNA repair and recombination proteins [BR:
ntp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CRH09_34655 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ATL70557
UniProt:
A0A291RTC1
LinkDB
All DBs
Position
complement(7799400..7803014)
Genome browser
AA seq
1204 aa
AA seq
DB search
MSTPRPPLAGLAATAGADAALTQVASLIGRTPVQLVAPSAVRPFVAATIAATRPLVVVTA
TGREADDLTVELAEILGDGVALFPSWETLPHERLSPSADTVGRRLQVLRRLTHPDDPVYP
EPLRVVVTTVRSLMQPMAGGLGDIEPVVLRVGAEFDFDELITRLVEFAYERVDMVGKRGE
FAVRGGILDVFPPTADHPVRVEFWGDEITELRPFSVADQRSLAEVEVDAVVAQPCRELLL
TEELRLRAAEVAAENPADAALVEMLEKLAQGIPVEGMEALLPALRPGELQLLTEVLPAGT
HVLLCDPEKIRTRAADLVRTGQEFLEASWTAASFGGAAPLGAHGLDLAASAYRGLDVVHA
SADACGLPWWTLSPLAADDPAELVLPVLAAPAARGSEELVATVFASLRAHVTTGGRAAIV
VAGHGTAQRILERLADAEVPAAALDPGAEPVRGLVGVLCGSLHDGIVFDDAKLVVIAESD
LTGNRVTAPGEGKKLPARRRNQVDPLALSAGDMVVHDQHGIGRFVEMIERTVGGARREYL
VIEYAPSKRGQPGDRLYVPMDSLDQLSRYVGGEMPSLSRLGGSDWANTKRKARKAVREIA
TELVQLYAARQAAPGHAFAPDSPWQQEMEDAFAFTETHDQLTAIAEVKADMEKAVPMDRV
ICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTERVAGFPVTVKGLSR
FTDAAESRAVLDGMAAGEVDIVVGTHRLLQTGVRWKDLGLVVIDEEQRFGVEHKEHIKAL
RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPILTYVGGYNDKQVAAAIRRE
LLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVAVAHGQMNEDTLEKTVQGFWERDFDVL
VCTTIIETGLDISNANTLIVERADALGLSQLHQLRGRVGRSRERGYAYFLYPAEKPLTET
AYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEA
YRAAADGRPITTEEEAKEVRIDLPVDAHIPPDYIASDRLRLEGYRKLAAAQDDSALAAVV
EELVDRYGPLPVEVGRLVSVARLRLLCREYGIAEVGVTGTTLKLSPLQLPDSKQLRLKRI
YPSATYRPTTGIVQLPLPRVEDSVGAGRIRDVRLLQYVADLLLALDGKPQGTVDLHVATE
VSAR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctcgtccgcctctcgcgggactggccgcgacggccggtgccgacgccgcg
ctgacacaggtcgcgagcctgatcggtcgcacgccggtgcaattggtggcgccgtcggcg
gtgcggccgttcgtcgcggcgaccattgccgcgacgcggccgctggtggtggtcaccgcc
accggccgcgaggccgacgacctgaccgtcgagctcgccgagatcctcggcgacggggtg
gcgctgtttccgtcctgggagacgctgccgcacgagcggctgtcgccgagcgccgacacc
gtgggcaggcgcctgcaggtgctgcgccgcctcacccatcccgacgacccggtctatccg
gagccgctgcgggtcgtggtcaccacggtgcgctcgctcatgcagccgatggccggtggc
ctcggcgatatcgagccggttgtgctgcgcgtgggggccgagttcgatttcgacgaattg
atcacgcgcctggtcgaattcgcctacgagcgggtcgacatggtcggcaagcgcggcgaa
ttcgcggtgcgcggcggcattctcgacgtcttcccgcccaccgccgatcatccggtgcgc
gtggagttctggggcgacgagatcaccgagctgcggccgttctcggtcgccgaccagcgc
tcgctggccgaggtcgaggtggatgccgttgtggcgcagccgtgccgcgagctgctgctc
accgaggagctgcggctgcgcgccgccgaggtggccgccgagaaccccgccgacgccgcc
ttggtcgagatgctggagaagctggcccagggcatcccggtcgagggcatggaggcgctg
ctgcccgcgctgcgcccgggcgagctgcaactgctcaccgaggtgctgcccgccggtacc
catgtgctgctgtgtgatccggagaagatccgcacccgggcggcggatctcgtccggacc
gggcaggagttcctggaggcgtcgtggacggcggcgtctttcggcggcgcggccccgctg
ggcgcgcacgggctcgacctggccgcctcggcctatcgcggcctggacgtggtgcacgcg
agcgccgacgcctgcgggctgccgtggtggacgctgagcccgctggccgccgacgatccg
gccgaactggtgctgccggtgctggcggccccggccgcgcgcggctccgaggaactggtc
gcgaccgtgttcgcctcgctgcgcgcgcatgtcaccacgggtggccgcgcggccatcgtc
gtcgccgggcacggcaccgcgcagcgcatcctggagcggctcgccgacgcggaagtcccg
gcggcggcgctggatccgggtgcggagccggtgcgcgggctggtcggggtgttgtgcgga
tcgctgcacgacggcatcgtcttcgatgacgcgaagctggtcgtcatcgccgaatccgac
ctcaccggcaaccgcgtcaccgcccccggcgagggcaagaagctcccggcgcgccgccgc
aatcaggtcgacccgctggcactgtcggccggcgacatggtggtgcacgaccagcacggc
atcggccggttcgtcgagatgatcgagcgcaccgtcggcggcgcgcgacgcgagtacctg
gtcatcgagtacgcgccgagcaagcgcggccagcccggcgaccggctgtacgtgccgatg
gactcgctggaccagctctcgcgctacgtcggcggcgagatgcccagcctgtcccggctc
ggcggctcggactgggccaacacgaaacgcaaggcgcgcaaggccgtccgcgagatcgcc
accgagctggtgcagctctacgccgcccggcaggccgcgcccggacatgccttcgccccc
gactccccgtggcagcaggagatggaggacgcgttcgcgttcaccgagacccacgaccag
ctcaccgccatcgccgaggtcaaggccgatatggagaaggcggtcccgatggaccgggtg
atctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcg
gtgcaggacggcaagcaggtggcggtgctggtgcccaccacgctgctggcccagcagcat
ctgcagacgttcaccgagcgcgtcgccggtttcccggtgacggtgaagggcctgtcccgc
ttcaccgatgccgccgagtcgcgcgcggtcctggacggcatggccgcgggcgaggtcgac
atcgtggtcggcacccaccgcctgctgcagaccggtgtgcggtggaaggatctgggcctg
gtcgtcatcgacgaggagcagcgcttcggcgtcgagcacaaggagcacatcaaggcgctg
cgcacccacgtcgacgtgctgaccatgtccgccaccccgattccgcgcacgctggagatg
agcctggcgggcatccgcgagatgtcgaccatcctcaccccgcccgaggagcggcacccc
atcctcacctacgtcggcggctacaacgacaaacaggtcgccgccgccatccggcgcgag
ctgctgcgcgacggccaggtgttttacgtgcacaaccgggtgtcctcgatcgacaaggcg
gccaagcggattcgcgatctggtgccggaggcgcgggtcgccgtcgcgcacggccagatg
aacgaggacacgctggagaagaccgtgcagggcttctgggagcgcgacttcgacgtgctg
gtgtgcaccacgatcatcgaaaccggtttggacatctccaatgccaacaccctgatcgtg
gaacgcgccgacgccctgggtctttcgcagctgcatcagctgcgcggccgggtcgggcgc
agccgcgagcgcgggtacgcctacttcctgtacccggcggagaagccgctcaccgagacc
gcctacgaccggctggccaccatctcgcagaactccgatctgggcgcgggcatggccgtg
gccatgaaggatctcgagatccgcggcgcgggcaacgtgctgggcgccgagcagtccggg
catgtcgcgggcgtcggattcgatctgtacgtgcgactggtgggcgaggccgtggaggct
tatcgcgcggcggccgacggccgcccgatcaccaccgaggaagaggccaaggaggtgcgc
atcgacctgccggtggacgcgcacatcccgcccgactacatcgccagcgaccggctgcgg
ctggagggctaccggaaactggccgccgcacaggacgattcggcgctggccgcggtggtg
gaggagctggtcgaccggtacggcccgctgccggtggaggtcgggcggctggtgtcggtg
gccaggctgcggctgctgtgccgcgagtacggcatcgccgaggtcggcgtcaccggcacc
acgctcaagctctccccgctgcagctgccggactcgaaacagttgcggctcaagcggatc
tacccgtcggcgacctaccggcccaccaccggcatcgtgcagctgccgctgccgcgggtg
gaggacagcgtcggcgcggggcgcattcgcgacgtgcggctgctgcagtatgtcgcggat
ctactgctggcgctggacggtaagccgcagggcaccgtggatctgcatgtggcgaccgag
gtttcggctcgatga
DBGET
integrated database retrieval system
